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Difference between revisions of "TSS:Hg 103386.1"

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Line 2: Line 2:
 
|RRT2=
 
|RRT2=
 
|WDR85=
 
|WDR85=
−
|all_trans=ENST00000479650.5:0 ENST00000475100.5:0 ENST00000472113.5:0 ENST00000467768.5:0 ENST00000476303.1:0 ENST00000491359.1:0 uc064xlz.1:0 uc064xmc.1:0 uc064xmd.1:0 uc064xmf.1:0 uc022bqk.2:0 uc064xmk.1:0 BC003123:0 BC017335:0 BC016349:0 AK308998:0 AK307180:0 AK310987:0 ENST00000277540.6:-2 NM_138778:-2 uc004cnk.1:-2 AK075115:-2 CU675946:81 HQ448236:83 KJ895195:83 ENST00000460572.1:141 uc064xmj.1:141 ENST00000481839.5:309 uc064xmi.1:309 ENST00000470855.5:318 uc064xmh.1:318
+
|all_trans=ENST00000277540.7:0 ENST00000479650.5:0 ENST00000475100.5:0 ENST00000472113.5:0 ENST00000467768.5:0 ENST00000476303.1:0 ENST00000491359.1:0 NM_001346376:0 NM_001346388:0 NM_001346392:0 NM_001346395:0 NM_001346374:0 NM_138778:0 NM_001346377:0 NM_001346394:0 NM_001346393:0 NM_001346391:0 NM_001346370:0 NM_001346379:0 NM_001346378:0 NM_001346387:0 NM_001346382:0 NM_001346375:0 NM_001346389:0 NM_001346384:0 NM_001346380:0 NM_001346381:0 NM_001346396:0 NM_001346371:0 NM_001346372:0 NM_001346390:0 NM_001346383:0 NM_001346385:0 NM_001346386:0 BC003123:0 BC017335:0 BC016349:0 AK308998:0 AK307180:0 AK310987:0 AK075115:-2 CU675946:81 HQ448236:83 KJ895195:83 ENST00000460572.1:141 NM_001346373:266 ENST00000481839.5:309 ENST00000470855.5:318
 
|chr=chr9
 
|chr=chr9
 
|cpg_percent=0.14
 
|cpg_percent=0.14
 
|distance=0
 
|distance=0
−
|distance_to_tss=40
+
|distance_to_tss=30
 
|end=137578933
 
|end=137578933
 
|end_of_center_position=137578896
 
|end_of_center_position=137578896
 
|entrez_id=92715
 
|entrez_id=92715
 
|gc_percent=0.79602
 
|gc_percent=0.79602
−
|gene_alias=C9orf112
+
|gene_alias=C9orf112{{!}}RRT2{{!}}WDR85
 
|gene_description=diphthamide biosynthesis 7
 
|gene_description=diphthamide biosynthesis 7
 
|gene_id=92715
 
|gene_id=92715
Line 21: Line 21:
 
|hgnc_mgi_id=HGNC:25199
 
|hgnc_mgi_id=HGNC:25199
 
|nearest_ensembl=ENSG00000148399
 
|nearest_ensembl=ENSG00000148399
−
|nearest_promoter_id=NM_001346371
+
|nearest_promoter_id=NM_001346387
 
|nearest_refseq=NM_138778
 
|nearest_refseq=NM_138778
 
|nearest_unigene=Hs.292570
 
|nearest_unigene=Hs.292570
−
|num_trans=31
+
|num_trans=48
 
|species=human
 
|species=human
 
|start=137578857
 
|start=137578857
 
|start_of_center_position=137578895
 
|start_of_center_position=137578895
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 uc064xlz.1 uc064xmc.1 uc064xmd.1 uc064xmf.1 uc022bqk.2 uc064xmk.1 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987
+
|transcript_name=ENST00000277540.7 ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 NM_001346376 NM_001346388 NM_001346392 NM_001346395 NM_001346374 NM_138778 NM_001346377 NM_001346394 NM_001346393 NM_001346391 NM_001346370 NM_001346379 NM_001346378 NM_001346387 NM_001346382 NM_001346375 NM_001346389 NM_001346384 NM_001346380 NM_001346381 NM_001346396 NM_001346371 NM_001346372 NM_001346390 NM_001346383 NM_001346385 NM_001346386 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_103386.1
 
|tss_id=hg_103386.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=
+
|uniprot_id=Q9BTV6
 
}}
 
}}

Revision as of 17:25, 15 June 2021

Basic information about the TSS

TSS ID:hg_103386.1
Species:human
Chr:chr9
TSS Classification:yes
Start:137578857
End:137578933
Strand:-
TSS Score:1
Start of the center position in the TSS region:137578895
End of the center position in the TSS region:137578896



Gene and protein annotation

Transcript_name:ENST00000277540.7 ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 NM_001346376 NM_001346388 NM_001346392 NM_001346395 NM_001346374 NM_138778 NM_001346377 NM_001346394 NM_001346393 NM_001346391 NM_001346370 NM_001346379 NM_001346378 NM_001346387 NM_001346382 NM_001346375 NM_001346389 NM_001346384 NM_001346380 NM_001346381 NM_001346396 NM_001346371 NM_001346372 NM_001346390 NM_001346383 NM_001346385 NM_001346386 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987
Distance:0
GeneID:92715
HGNC/MGI_ID:HGNC:25199
UniProt_ID:Q9BTV6
Gene_name:diphthamide biosynthesis 7
Gene_symbol:DPH7
Gene_synonyms:FLJ90634 RRT2
Gene_source:HGNC:25199



Transcript annotation

Transcript_name:ENST00000277540.7 ENST00000479650.5 ENST00000475100.5 ENST00000472113.5 ENST00000467768.5 ENST00000476303.1 ENST00000491359.1 NM_001346376 NM_001346388 NM_001346392 NM_001346395 NM_001346374 NM_138778 NM_001346377 NM_001346394 NM_001346393 NM_001346391 NM_001346370 NM_001346379 NM_001346378 NM_001346387 NM_001346382 NM_001346375 NM_001346389 NM_001346384 NM_001346380 NM_001346381 NM_001346396 NM_001346371 NM_001346372 NM_001346390 NM_001346383 NM_001346385 NM_001346386 BC003123 BC017335 BC016349 AK308998 AK307180 AK310987
Distance:0
Num_trans:48
All_trans:ENST00000277540.7:0 ENST00000479650.5:0 ENST00000475100.5:0 ENST00000472113.5:0 ENST00000467768.5:0 ENST00000476303.1:0 ENST00000491359.1:0 NM_001346376:0 NM_001346388:0 NM_001346392:0 NM_001346395:0 NM_001346374:0 NM_138778:0 NM_001346377:0 NM_001346394:0 NM_001346393:0 NM_001346391:0 NM_001346370:0 NM_001346379:0 NM_001346378:0 NM_001346387:0 NM_001346382:0 NM_001346375:0 NM_001346389:0 NM_001346384:0 NM_001346380:0 NM_001346381:0 NM_001346396:0 NM_001346371:0 NM_001346372:0 NM_001346390:0 NM_001346383:0 NM_001346385:0 NM_001346386:0 BC003123:0 BC017335:0 BC016349:0 AK308998:0 AK307180:0 AK310987:0 AK075115:-2 CU675946:81 HQ448236:83 KJ895195:83 ENST00000460572.1:141 NM_001346373:266 ENST00000481839.5:309 ENST00000470855.5:318



TATA-Box annotation

Distance to TSS:30
Nearest PromoterID:NM_001346387
Entrez ID:92715
Nearest Unigene:Hs.292570
Nearest Refseq:NM_138778
Nearest Ensembl:ENSG00000148399
Gene Name:diphthamide biosynthesis 7
Gene Alias:C9orf112|RRT2|WDR85
Gene Description:diphthamide biosynthesis 7
Gene Type:protein-coding
CpG%:0.14
GC%:0.79602
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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