Difference between revisions of "TSS:Hg 10339.1"
From referenceTSS
| Line 7: | Line 7: | ||
|CDP= | |CDP= | ||
|PND= | |PND= | ||
| − | |all_trans=ENST00000376480.7:101 ENST00000610706.1:101 NM_006172 | + | |all_trans=ENST00000376480.7:101 ENST00000610706.1:101 NM_006172:101 BC005893:101 M30262:106 DQ893115:195 DQ896389:195 EU176780:195 KJ897262:198 KR710208:198 AB528342:199 ENST00000376476.1:-455 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 16: | Line 16: | ||
|entrez_id=4878 | |entrez_id=4878 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=ANF | + | |gene_alias=ANF{{!}}ANP{{!}}ATFB6{{!}}ATRST2{{!}}CDD{{!}}CDD-ANF{{!}}CDP{{!}}PND |
|gene_description=natriuretic peptide A | |gene_description=natriuretic peptide A | ||
|gene_id=4878 | |gene_id=4878 | ||
| Line 29: | Line 29: | ||
|nearest_refseq=NM_006172 | |nearest_refseq=NM_006172 | ||
|nearest_unigene=Hs.75640 | |nearest_unigene=Hs.75640 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=human | |species=human | ||
|start=11847883 | |start=11847883 | ||
|start_of_center_position=11847886 | |start_of_center_position=11847886 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(AACTTTAAAAGG,-,0.00),-33(ACTTTAAAAGGG,+,0.00),-32(CTTTAAAAGGGC,+,0.00),72(GGCTATAAAAAG,-,0.00) |
| − | |transcript_name=ENST00000376480.7 ENST00000610706.1 NM_006172 | + | |transcript_name=ENST00000376480.7 ENST00000610706.1 NM_006172 BC005893 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10339.1 | |tss_id=hg_10339.1 | ||
Revision as of 17:25, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11847886 |
|---|---|
| End of the center position in the TSS region: | 11847887 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000376480.7 ENST00000610706.1 NM_006172 BC005893 |
|---|---|
| Distance: | 101 |
| Num_trans: | 12 |
| All_trans: | ENST00000376480.7:101 ENST00000610706.1:101 NM_006172:101 BC005893:101 M30262:106 DQ893115:195 DQ896389:195 EU176780:195 KJ897262:198 KR710208:198 AB528342:199 ENST00000376476.1:-455 |
TATA-Box annotation
| Distance to TSS: | -104 |
|---|---|
| Nearest PromoterID: | NM_006172 |
| Entrez ID: | 4878 |
| Nearest Unigene: | Hs.75640 |
| Nearest Refseq: | NM_006172 |
| Nearest Ensembl: | ENSG00000175206 |
| Gene Name: | natriuretic peptide A |
| Gene Alias: | ANF|ANP|ATFB6|ATRST2|CDD|CDD-ANF|CDP|PND |
| Gene Description: | natriuretic peptide A |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(AACTTTAAAAGG,-,0.00),-33(ACTTTAAAAGGG,+,0.00),-32(CTTTAAAAGGGC,+,0.00),72(GGCTATAAAAAG,-,0.00) |
