Difference between revisions of "TSS:Hg 1034.1"
From referenceTSS
| Line 2: | Line 2: | ||
|PAX7B= | |PAX7B= | ||
|RMS2= | |RMS2= | ||
| − | |all_trans= | + | |all_trans=ENST00000420770.7:0 NM_002584:0 NM_013945:0 NM_001135254:0 ENST00000375375.7:125 X96743:125 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=14 |
|end=18630881 | |end=18630881 | ||
|end_of_center_position=18630861 | |end_of_center_position=18630861 | ||
|entrez_id=5081 | |entrez_id=5081 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=HUP1 | + | |gene_alias=HUP1{{!}}PAX7B{{!}}RMS2 |
|gene_description=paired box 7 | |gene_description=paired box 7 | ||
|gene_id=5081 | |gene_id=5081 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:8621 | |hgnc_mgi_id=HGNC:8621 | ||
|nearest_ensembl=ENSG00000009709 | |nearest_ensembl=ENSG00000009709 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002584 |
|nearest_refseq=NM_002584 | |nearest_refseq=NM_002584 | ||
|nearest_unigene=Hs.113253 | |nearest_unigene=Hs.113253 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=18630860 | |start_of_center_position=18630860 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000420770.7 NM_002584 NM_013945 NM_001135254 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_1034.1 | |tss_id=hg_1034.1 | ||
Revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18630860 |
|---|---|
| End of the center position in the TSS region: | 18630861 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000420770.7 NM_002584 NM_013945 NM_001135254 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | ENST00000420770.7:0 NM_002584:0 NM_013945:0 NM_001135254:0 ENST00000375375.7:125 X96743:125 |
TATA-Box annotation
| Distance to TSS: | 14 |
|---|---|
| Nearest PromoterID: | NM_002584 |
| Entrez ID: | 5081 |
| Nearest Unigene: | Hs.113253 |
| Nearest Refseq: | NM_002584 |
| Nearest Ensembl: | ENSG00000009709 |
| Gene Name: | paired box 7 |
| Gene Alias: | HUP1|PAX7B|RMS2 |
| Gene Description: | paired box 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
