Difference between revisions of "TSS:Hg 103402.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BS69= | |BS69= | ||
|MRD30= | |MRD30= | ||
| − | |all_trans=AK294469:0 AK294781:0 AK312570:-46 ENST00000509513.6 | + | |all_trans=NM_001330057:0 NM_001370124:0 NM_001370122:0 NM_001202465:0 NM_001202466:0 NM_001370120:0 NM_001370116:0 NM_001370115:0 NM_001370113:0 NM_001370098:0 NM_001370107:0 NM_001370097:0 NM_001370106:0 NM_212479:0 AK294469:0 AK294781:0 AK312570:-46 ENST00000509513.6:-71 BC034784:-71 ENST00000381591.5:245 ENST00000309776.8:-290 ENST00000397959.7:-290 NM_006624:-290 NM_001370119:-290 NM_001370118:-290 NM_001370105:-290 ENST00000439456.5:-309 ENST00000397962.8:-309 NM_001370114:441 NM_001370111:441 NM_001370110:441 NM_001370099:441 NM_001370108:441 NM_001370104:-481 NR_163254:-481 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-1 |
|end=134824 | |end=134824 | ||
|end_of_center_position=134799 | |end_of_center_position=134799 | ||
|entrez_id=10771 | |entrez_id=10771 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=BRAM1 | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
|gene_description=zinc finger MYND-type containing 11 | |gene_description=zinc finger MYND-type containing 11 | ||
|gene_id=10771 | |gene_id=10771 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16966 | |hgnc_mgi_id=HGNC:16966 | ||
|nearest_ensembl=ENSG00000015171 | |nearest_ensembl=ENSG00000015171 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370106 |
|nearest_refseq=NM_006624 | |nearest_refseq=NM_006624 | ||
|nearest_unigene=Hs.292265 | |nearest_unigene=Hs.292265 | ||
| − | |num_trans= | + | |num_trans=35 |
|species=human | |species=human | ||
|start=134773 | |start=134773 | ||
|start_of_center_position=134798 | |start_of_center_position=134798 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK294469 AK294781 | + | |transcript_name=NM_001330057 NM_001370124 NM_001370122 NM_001202465 NM_001202466 NM_001370120 NM_001370116 NM_001370115 NM_001370113 NM_001370098 NM_001370107 NM_001370097 NM_001370106 NM_212479 AK294469 AK294781 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103402.1 | |tss_id=hg_103402.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=J3QKD2 Q15326 Q5UGI2 |
}} | }} | ||
Revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134798 |
|---|---|
| End of the center position in the TSS region: | 134799 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001330057 NM_001370124 NM_001370122 NM_001202465 NM_001202466 NM_001370120 NM_001370116 NM_001370115 NM_001370113 NM_001370098 NM_001370107 NM_001370097 NM_001370106 NM_212479 AK294469 AK294781 |
|---|---|
| Distance: | 0 |
| Num_trans: | 35 |
| All_trans: | NM_001330057:0 NM_001370124:0 NM_001370122:0 NM_001202465:0 NM_001202466:0 NM_001370120:0 NM_001370116:0 NM_001370115:0 NM_001370113:0 NM_001370098:0 NM_001370107:0 NM_001370097:0 NM_001370106:0 NM_212479:0 AK294469:0 AK294781:0 AK312570:-46 ENST00000509513.6:-71 BC034784:-71 ENST00000381591.5:245 ENST00000309776.8:-290 ENST00000397959.7:-290 NM_006624:-290 NM_001370119:-290 NM_001370118:-290 NM_001370105:-290 ENST00000439456.5:-309 ENST00000397962.8:-309 NM_001370114:441 NM_001370111:441 NM_001370110:441 NM_001370099:441 NM_001370108:441 NM_001370104:-481 NR_163254:-481 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001370106 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | zinc finger MYND-type containing 11 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
