Difference between revisions of "TSS:Hg 103404.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BS69= | |BS69= | ||
|MRD30= | |MRD30= | ||
| − | |all_trans=ENST00000381591.5 | + | |all_trans=ENST00000381591.5:36 AK294469:-115 AK294781:-115 NM_001330057:-117 NM_001370124:-117 NM_001370122:-117 NM_001202465:-117 NM_001202466:-117 NM_001370120:-117 NM_001370116:-117 NM_001370115:-117 NM_001370113:-117 NM_001370098:-117 NM_001370107:-117 NM_001370097:-117 NM_001370106:-117 NM_212479:-117 AK312570:-189 ENST00000509513.6:-214 BC034784:-214 NM_001370114:232 NM_001370111:232 NM_001370110:232 NM_001370099:232 NM_001370108:232 ENST00000381604.9:422 NM_001370121:422 NM_001370123:422 NM_001202464:422 NM_001370117:422 NM_001370112:422 NM_001370100:422 ENST00000309776.8:-433 ENST00000397959.7:-433 NM_006624:-433 NM_001370119:-433 NM_001370118:-433 NM_001370105:-433 ENST00000602682.6:439 ENST00000403354.5:451 ENST00000381607.8:451 BC091489:451 ENST00000439456.5:-452 ENST00000397962.8:-452 ENST00000627286.2:475 ENST00000402736.5:476 ENST00000397955.7:486 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance=36 | |distance=36 | ||
| − | |distance_to_tss= | + | |distance_to_tss=175 |
|end=135033 | |end=135033 | ||
|end_of_center_position=134975 | |end_of_center_position=134975 | ||
|entrez_id=10771 | |entrez_id=10771 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=BRAM1 | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
|gene_description=zinc finger MYND-type containing 11 | |gene_description=zinc finger MYND-type containing 11 | ||
|gene_id=10771 | |gene_id=10771 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16966 | |hgnc_mgi_id=HGNC:16966 | ||
|nearest_ensembl=ENSG00000015171 | |nearest_ensembl=ENSG00000015171 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370107 |
|nearest_refseq=NM_006624 | |nearest_refseq=NM_006624 | ||
|nearest_unigene=Hs.292265 | |nearest_unigene=Hs.292265 | ||
| − | |num_trans= | + | |num_trans=47 |
|species=human | |species=human | ||
|start=134916 | |start=134916 | ||
|start_of_center_position=134974 | |start_of_center_position=134974 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000381591.5 | + | |transcript_name=ENST00000381591.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103404.1 | |tss_id=hg_103404.1 | ||
Revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 134974 |
|---|---|
| End of the center position in the TSS region: | 134975 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000381591.5 |
|---|---|
| Distance: | 36 |
| Num_trans: | 47 |
| All_trans: | ENST00000381591.5:36 AK294469:-115 AK294781:-115 NM_001330057:-117 NM_001370124:-117 NM_001370122:-117 NM_001202465:-117 NM_001202466:-117 NM_001370120:-117 NM_001370116:-117 NM_001370115:-117 NM_001370113:-117 NM_001370098:-117 NM_001370107:-117 NM_001370097:-117 NM_001370106:-117 NM_212479:-117 AK312570:-189 ENST00000509513.6:-214 BC034784:-214 NM_001370114:232 NM_001370111:232 NM_001370110:232 NM_001370099:232 NM_001370108:232 ENST00000381604.9:422 NM_001370121:422 NM_001370123:422 NM_001202464:422 NM_001370117:422 NM_001370112:422 NM_001370100:422 ENST00000309776.8:-433 ENST00000397959.7:-433 NM_006624:-433 NM_001370119:-433 NM_001370118:-433 NM_001370105:-433 ENST00000602682.6:439 ENST00000403354.5:451 ENST00000381607.8:451 BC091489:451 ENST00000439456.5:-452 ENST00000397962.8:-452 ENST00000627286.2:475 ENST00000402736.5:476 ENST00000397955.7:486 |
TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NM_001370107 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | zinc finger MYND-type containing 11 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
