Difference between revisions of "TSS:Hg 103405.1"
From referenceTSS
| Line 2: | Line 2: | ||
|BS69= | |BS69= | ||
|MRD30= | |MRD30= | ||
| − | |all_trans=ENST00000381591.5:5 | + | |all_trans=ENST00000381591.5:5 NM_001370114:201 NM_001370111:201 NM_001370110:201 NM_001370099:201 NM_001370108:201 AK294469:-246 AK294781:-246 NM_001330057:-248 NM_001370124:-248 NM_001370122:-248 NM_001202465:-248 NM_001202466:-248 NM_001370120:-248 NM_001370116:-248 NM_001370115:-248 NM_001370113:-248 NM_001370098:-248 NM_001370107:-248 NM_001370097:-248 NM_001370106:-248 NM_212479:-248 AK312570:-320 ENST00000509513.6:-345 BC034784:-345 ENST00000381604.9:391 NM_001370121:391 NM_001370123:391 NM_001202464:391 NM_001370117:391 NM_001370112:391 NM_001370100:391 ENST00000602682.6:408 ENST00000403354.5:420 ENST00000381607.8:420 BC091489:420 ENST00000627286.2:444 ENST00000402736.5:445 ENST00000397955.7:455 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance=5 | |distance=5 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-209 |
|end=135064 | |end=135064 | ||
|end_of_center_position=135056 | |end_of_center_position=135056 | ||
|entrez_id=10771 | |entrez_id=10771 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=BRAM1 | + | |gene_alias=BRAM1{{!}}BS69{{!}}MRD30 |
|gene_description=zinc finger MYND-type containing 11 | |gene_description=zinc finger MYND-type containing 11 | ||
|gene_id=10771 | |gene_id=10771 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:16966 | |hgnc_mgi_id=HGNC:16966 | ||
|nearest_ensembl=ENSG00000015171 | |nearest_ensembl=ENSG00000015171 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370114 |
|nearest_refseq=NM_006624 | |nearest_refseq=NM_006624 | ||
|nearest_unigene=Hs.292265 | |nearest_unigene=Hs.292265 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=135047 | |start=135047 | ||
|start_of_center_position=135055 | |start_of_center_position=135055 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000381591.5 | + | |transcript_name=ENST00000381591.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103405.1 | |tss_id=hg_103405.1 | ||
Revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 135055 |
|---|---|
| End of the center position in the TSS region: | 135056 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000381591.5 |
|---|---|
| Distance: | 5 |
| Num_trans: | 39 |
| All_trans: | ENST00000381591.5:5 NM_001370114:201 NM_001370111:201 NM_001370110:201 NM_001370099:201 NM_001370108:201 AK294469:-246 AK294781:-246 NM_001330057:-248 NM_001370124:-248 NM_001370122:-248 NM_001202465:-248 NM_001202466:-248 NM_001370120:-248 NM_001370116:-248 NM_001370115:-248 NM_001370113:-248 NM_001370098:-248 NM_001370107:-248 NM_001370097:-248 NM_001370106:-248 NM_212479:-248 AK312570:-320 ENST00000509513.6:-345 BC034784:-345 ENST00000381604.9:391 NM_001370121:391 NM_001370123:391 NM_001202464:391 NM_001370117:391 NM_001370112:391 NM_001370100:391 ENST00000602682.6:408 ENST00000403354.5:420 ENST00000381607.8:420 BC091489:420 ENST00000627286.2:444 ENST00000402736.5:445 ENST00000397955.7:455 |
TATA-Box annotation
| Distance to TSS: | -209 |
|---|---|
| Nearest PromoterID: | NM_001370114 |
| Entrez ID: | 10771 |
| Nearest Unigene: | Hs.292265 |
| Nearest Refseq: | NM_006624 |
| Nearest Ensembl: | ENSG00000015171 |
| Gene Name: | zinc finger MYND-type containing 11 |
| Gene Alias: | BRAM1|BS69|MRD30 |
| Gene Description: | zinc finger MYND-type containing 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
