Difference between revisions of "TSS:Hg 103442.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NCRNA00200= | |NCRNA00200= | ||
| + | |all_trans=LF330765:92 MA566342:92 LF330766:-347 MA566343:-347 LF330767:-412 MA566344:-412 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=92 |
|distance_to_tss=-34830 | |distance_to_tss=-34830 | ||
|end=1124948 | |end=1124948 | ||
| Line 9: | Line 10: | ||
|entrez_id=399706 | |entrez_id=399706 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=C10orf139 | + | |gene_alias=C10orf139{{!}}NCRNA00200 |
|gene_description=long intergenic non-protein coding RNA 200 | |gene_description=long intergenic non-protein coding RNA 200 | ||
|gene_name=LINC00200 | |gene_name=LINC00200 | ||
| Line 17: | Line 18: | ||
|nearest_refseq=NM_001010910 | |nearest_refseq=NM_001010910 | ||
|nearest_unigene=Hs.721191 | |nearest_unigene=Hs.721191 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=1124927 | |start=1124927 | ||
|start_of_center_position=1124937 | |start_of_center_position=1124937 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF330765 MA566342 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103442.1 | |tss_id=hg_103442.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:26, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 1124937 |
|---|---|
| End of the center position in the TSS region: | 1124938 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF330765 MA566342 |
|---|---|
| Distance: | 92 |
| Num_trans: | 6 |
| All_trans: | LF330765:92 MA566342:92 LF330766:-347 MA566343:-347 LF330767:-412 MA566344:-412 |
TATA-Box annotation
| Distance to TSS: | -34830 |
|---|---|
| Nearest PromoterID: | NR_015376 |
| Entrez ID: | 399706 |
| Nearest Unigene: | Hs.721191 |
| Nearest Refseq: | NM_001010910 |
| Nearest Ensembl: | ENSG00000229205 |
| Gene Name: | LINC00200 |
| Gene Alias: | C10orf139|NCRNA00200 |
| Gene Description: | long intergenic non-protein coding RNA 200 |
| Gene Type: | ncRNA |
| CpG%: | 0.04 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
