Difference between revisions of "TSS:Hg 103443.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|NCRNA00200= | |NCRNA00200= | ||
| − | |all_trans=AK097673:-3 BC133040:-11 | + | |all_trans=ENST00000666348.1:0 AK097673:-3 BC133040:-11 ENST00000647993.1:-15 ENST00000655745.1:-15 ENST00000652683.1:-16 ENST00000583117.1:-23 ENST00000425630.2:-59 NR_015376:-59 BC133038:-59 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=67 | |distance_to_tss=67 | ||
|end=1159844 | |end=1159844 | ||
| Line 10: | Line 10: | ||
|entrez_id=399706 | |entrez_id=399706 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=C10orf139 | + | |gene_alias=C10orf139{{!}}NCRNA00200 |
|gene_description=long intergenic non-protein coding RNA 200 | |gene_description=long intergenic non-protein coding RNA 200 | ||
| − | |gene_id= | + | |gene_id= |
|gene_name=long intergenic non-protein coding RNA 200 | |gene_name=long intergenic non-protein coding RNA 200 | ||
|gene_source=HGNC:30974 | |gene_source=HGNC:30974 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001010910 | |nearest_refseq=NM_001010910 | ||
|nearest_unigene=Hs.721191 | |nearest_unigene=Hs.721191 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=1159826 | |start=1159826 | ||
|start_of_center_position=1159835 | |start_of_center_position=1159835 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000666348.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103443.1 | |tss_id=hg_103443.1 | ||
Revision as of 17:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 1159835 |
|---|---|
| End of the center position in the TSS region: | 1159836 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000666348.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENST00000666348.1:0 AK097673:-3 BC133040:-11 ENST00000647993.1:-15 ENST00000655745.1:-15 ENST00000652683.1:-16 ENST00000583117.1:-23 ENST00000425630.2:-59 NR_015376:-59 BC133038:-59 |
TATA-Box annotation
| Distance to TSS: | 67 |
|---|---|
| Nearest PromoterID: | NR_015376 |
| Entrez ID: | 399706 |
| Nearest Unigene: | Hs.721191 |
| Nearest Refseq: | NM_001010910 |
| Nearest Ensembl: | ENSG00000229205 |
| Gene Name: | long intergenic non-protein coding RNA 200 |
| Gene Alias: | C10orf139|NCRNA00200 |
| Gene Description: | long intergenic non-protein coding RNA 200 |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
