Difference between revisions of "TSS:Hg 103518.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CBA1= | ||
| + | |COPEB= | ||
| + | |CPBP= | ||
| + | |GBF= | ||
| + | |PAC1= | ||
| + | |ST12= | ||
| + | |ZF9= | ||
| + | |all_trans=LF330739:-362 MA566316:-362 LF330740:-471 MA566317:-471 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-362 | ||
|distance_to_tss=-880 | |distance_to_tss=-880 | ||
| + | |end=3786167 | ||
| + | |end_of_center_position=3786162 | ||
|entrez_id=1316 | |entrez_id=1316 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=BCD1 | + | |gene_alias=BCD1{{!}}CBA1{{!}}COPEB{{!}}CPBP{{!}}GBF{{!}}PAC1{{!}}ST12{{!}}ZF9 |
|gene_description=Kruppel like factor 6 | |gene_description=Kruppel like factor 6 | ||
|gene_name=KLF6 | |gene_name=KLF6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000067082 | |nearest_ensembl=ENSG00000067082 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001160125 |
|nearest_refseq=NM_001300 | |nearest_refseq=NM_001300 | ||
|nearest_unigene=Hs.4055 | |nearest_unigene=Hs.4055 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=3786155 | ||
| + | |start_of_center_position=3786161 | ||
| + | |strand=+ | ||
| + | |transcript_name=LF330739 MA566316 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103518.1 | |tss_id=hg_103518.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3786161 |
|---|---|
| End of the center position in the TSS region: | 3786162 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF330739 MA566316 |
|---|---|
| Distance: | -362 |
| Num_trans: | 4 |
| All_trans: | LF330739:-362 MA566316:-362 LF330740:-471 MA566317:-471 |
TATA-Box annotation
| Distance to TSS: | -880 |
|---|---|
| Nearest PromoterID: | NM_001160125 |
| Entrez ID: | 1316 |
| Nearest Unigene: | Hs.4055 |
| Nearest Refseq: | NM_001300 |
| Nearest Ensembl: | ENSG00000067082 |
| Gene Name: | KLF6 |
| Gene Alias: | BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 |
| Gene Description: | Kruppel like factor 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
