Difference between revisions of "TSS:Hg 103546.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=NA | ||
|distance_to_tss=18813 | |distance_to_tss=18813 | ||
| + | |end=3852777 | ||
| + | |end_of_center_position=3852763 | ||
|entrez_id=105376365 | |entrez_id=105376365 | ||
|gc_percent=0.338308 | |gc_percent=0.338308 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=long intergenic non-protein coding RNA 2639 |
| − | |gene_name= | + | |gene_name=LINC02639 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|nearest_ensembl=ENSG00000230573 | |nearest_ensembl=ENSG00000230573 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_134490 | |nearest_refseq=NR_134490 | ||
|nearest_unigene=Hs.460114 | |nearest_unigene=Hs.460114 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=3852748 | ||
| + | |start_of_center_position=3852762 | ||
| + | |strand=+ | ||
| + | |tata_box=18(GTCTCTTTAAAG,-,0.00),20(CTCTTTAAAGCA,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_103546.1 | |tss_id=hg_103546.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:29, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3852762 |
|---|---|
| End of the center position in the TSS region: | 3852763 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 18813 |
|---|---|
| Nearest PromoterID: | NR_134490 |
| Entrez ID: | 105376365 |
| Nearest Unigene: | Hs.460114 |
| Nearest Refseq: | NR_134490 |
| Nearest Ensembl: | ENSG00000230573 |
| Gene Name: | LINC02639 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 2639 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.338308 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 18(GTCTCTTTAAAG,-,0.00),20(CTCTTTAAAGCA,+,0.00) |
