Difference between revisions of "TSS:Hg 103570.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=NA | ||
|distance_to_tss=-5391 | |distance_to_tss=-5391 | ||
| + | |end=4046338 | ||
| + | |end_of_center_position=4046336 | ||
|entrez_id=101927964 | |entrez_id=101927964 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_120632 | |nearest_refseq=NR_120632 | ||
|nearest_unigene=Hs.737041 | |nearest_unigene=Hs.737041 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=4046332 | ||
| + | |start_of_center_position=4046335 | ||
| + | |strand=+ | ||
| + | |tata_box=-35(GGGTATTTAAGG,-,0.00),38(GTTTTTTAAAGC,-,0.00),39(TTTTTTAAAGCA,+,0.00),54(CCTTTTAGAAAA,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_103570.1 | |tss_id=hg_103570.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:30, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 4046335 |
|---|---|
| End of the center position in the TSS region: | 4046336 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -5391 |
|---|---|
| Nearest PromoterID: | NR_120632 |
| Entrez ID: | 101927964 |
| Nearest Unigene: | Hs.737041 |
| Nearest Refseq: | NR_120632 |
| Nearest Ensembl: | ENSG00000236990 |
| Gene Name: | LOC101927964 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC101927964 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGGTATTTAAGG,-,0.00),38(GTTTTTTAAAGC,-,0.00),39(TTTTTTAAAGCA,+,0.00),54(CCTTTTAGAAAA,+,0.00) |
