Difference between revisions of "TSS:Hg 103633.1"
From referenceTSS
| Line 2: | Line 2: | ||
|SPC= | |SPC= | ||
|UCNIII= | |UCNIII= | ||
| − | |all_trans=ENST00000380433. | + | |all_trans=ENST00000380433.5:-7 NM_053049:-7 BC100867:93 BC100868:93 BC100869:93 BC100870:93 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-7 |
| − | |distance_to_tss= | + | |distance_to_tss=20 |
|end=5364999 | |end=5364999 | ||
|end_of_center_position=5364986 | |end_of_center_position=5364986 | ||
|entrez_id=114131 | |entrez_id=114131 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| − | |gene_alias=SCP | + | |gene_alias=SCP{{!}}SPC{{!}}UCNIII |
|gene_description=urocortin 3 | |gene_description=urocortin 3 | ||
|gene_id=114131 | |gene_id=114131 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_053049 | |nearest_refseq=NM_053049 | ||
|nearest_unigene=Hs.511775 | |nearest_unigene=Hs.511775 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=5364972 | |start=5364972 | ||
|start_of_center_position=5364985 | |start_of_center_position=5364985 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000380433. | + | |transcript_name=ENST00000380433.5 NM_053049 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103633.1 | |tss_id=hg_103633.1 | ||
Revision as of 17:31, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5364985 |
|---|---|
| End of the center position in the TSS region: | 5364986 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000380433.5 NM_053049 |
|---|---|
| Distance: | -7 |
| Num_trans: | 6 |
| All_trans: | ENST00000380433.5:-7 NM_053049:-7 BC100867:93 BC100868:93 BC100869:93 BC100870:93 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_053049 |
| Entrez ID: | 114131 |
| Nearest Unigene: | Hs.511775 |
| Nearest Refseq: | NM_053049 |
| Nearest Ensembl: | ENSG00000178473 |
| Gene Name: | urocortin 3 |
| Gene Alias: | SCP|SPC|UCNIII |
| Gene Description: | urocortin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
