Difference between revisions of "TSS:Hg 103713.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000613651. | + | |all_trans=ENST00000613651.2:-42 ENST00000667809.1:-48 AY007155:-65 ENST00000663449.1:-98 ENST00000455810.5:-179 NR_036502:-179 NR_036503:-179 ENST00000445427.1:-185 LP895775:-205 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance= | + | |distance=-42 |
|distance_to_tss=34 | |distance_to_tss=34 | ||
|end=6580621 | |end=6580621 | ||
| Line 9: | Line 9: | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=PRKCT | + | |gene_alias=PRKCT{{!}}nPKC-theta |
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
|gene_id=439949 | |gene_id=439949 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=6580612 | |start_of_center_position=6580612 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000613651. | + | |transcript_name=ENST00000613651.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103713.1 | |tss_id=hg_103713.1 | ||
Revision as of 17:33, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6580612 |
|---|---|
| End of the center position in the TSS region: | 6580613 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000613651.2 |
|---|---|
| Distance: | -42 |
| Num_trans: | 9 |
| All_trans: | ENST00000613651.2:-42 ENST00000667809.1:-48 AY007155:-65 ENST00000663449.1:-98 ENST00000455810.5:-179 NR_036502:-179 NR_036503:-179 ENST00000445427.1:-185 LP895775:-205 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT|nPKC-theta |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
