Difference between revisions of "TSS:Hg 103715.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000613651. | + | |all_trans=ENST00000613651.2:-144 ENST00000667809.1:-150 AY007155:-167 ENST00000663449.1:-200 ENST00000455810.5:-281 NR_036502:-281 NR_036503:-281 ENST00000445427.1:-287 LP895775:-307 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance=- | + | |distance=-144 |
|distance_to_tss=-65 | |distance_to_tss=-65 | ||
|end=6580716 | |end=6580716 | ||
| Line 9: | Line 9: | ||
|entrez_id=5588 | |entrez_id=5588 | ||
|gc_percent=0.497512 | |gc_percent=0.497512 | ||
| − | |gene_alias=PRKCT | + | |gene_alias=PRKCT{{!}}nPKC-theta |
|gene_description=protein kinase C theta | |gene_description=protein kinase C theta | ||
|gene_id=439949 | |gene_id=439949 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=6580710 | |start_of_center_position=6580710 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=19(CGCTAGAAAGGG,-,0.00),46(CCTTTTAAAATG,+,0.00) |
| − | |transcript_name=ENST00000613651. | + | |transcript_name=ENST00000613651.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103715.1 | |tss_id=hg_103715.1 | ||
Revision as of 17:33, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6580710 |
|---|---|
| End of the center position in the TSS region: | 6580711 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000613651.2 |
|---|---|
| Distance: | -144 |
| Num_trans: | 9 |
| All_trans: | ENST00000613651.2:-144 ENST00000667809.1:-150 AY007155:-167 ENST00000663449.1:-200 ENST00000455810.5:-281 NR_036502:-281 NR_036503:-281 ENST00000445427.1:-287 LP895775:-307 |
TATA-Box annotation
| Distance to TSS: | -65 |
|---|---|
| Nearest PromoterID: | NM_001323265 |
| Entrez ID: | 5588 |
| Nearest Unigene: | Hs.498570 |
| Nearest Refseq: | NM_006257 |
| Nearest Ensembl: | ENSG00000065675 |
| Gene Name: | PRKCQ antisense RNA 1 |
| Gene Alias: | PRKCT|nPKC-theta |
| Gene Description: | protein kinase C theta |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.497512 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 19(CGCTAGAAAGGG,-,0.00),46(CCTTTTAAAATG,+,0.00) |
