Difference between revisions of "TSS:Hg 103724.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000648995.1:0 NR_138480:-26 ENST00000649087.1:-71 ENST00000650334.1:-132 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=41 | |distance_to_tss=41 | ||
|end=6737438 | |end=6737438 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.557214 | |gc_percent=0.557214 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=lncRNA in | + | |gene_description=lncRNA in non-homologous end joining pathway 1 |
|gene_name=LINP1 | |gene_name=LINP1 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| Line 17: | Line 17: | ||
|nearest_refseq=NR_138480 | |nearest_refseq=NR_138480 | ||
|nearest_unigene=Hs.568834 | |nearest_unigene=Hs.568834 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=6737407 | |start=6737407 | ||
|start_of_center_position=6737422 | |start_of_center_position=6737422 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000648995.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103724.1 | |tss_id=hg_103724.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:33, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6737422 |
|---|---|
| End of the center position in the TSS region: | 6737423 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000648995.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000648995.1:0 NR_138480:-26 ENST00000649087.1:-71 ENST00000650334.1:-132 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NR_138480 |
| Entrez ID: | 108570035 |
| Nearest Unigene: | Hs.568834 |
| Nearest Refseq: | NR_138480 |
| Nearest Ensembl: | |
| Gene Name: | LINP1 |
| Gene Alias: | - |
| Gene Description: | lncRNA in non-homologous end joining pathway 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.557214 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
