Difference between revisions of "TSS:Hg 103769.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ATP5CL1= | |ATP5CL1= | ||
| − | |all_trans=ENST00000473809.5:16 | + | |all_trans=LF346098:14 MA581675:14 ENST00000473809.5:16 LF346099:-156 MA581676:-156 LF346100:-253 MA581677:-253 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=14 |
| − | |distance_to_tss= | + | |distance_to_tss=11853 |
|end=7800036 | |end=7800036 | ||
|end_of_center_position=7800030 | |end_of_center_position=7800030 | ||
|entrez_id=509 | |entrez_id=509 | ||
|gc_percent=0.288557 | |gc_percent=0.288557 | ||
| − | |gene_alias=ATP5C | + | |gene_alias=ATP5C{{!}}ATP5C1{{!}}ATP5CL1 |
| − | |gene_description= | + | |gene_description=ATP synthase F1 subunit gamma |
|gene_id=509 | |gene_id=509 | ||
| − | |gene_name= | + | |gene_name=ATP5F1C |
|gene_source=HGNC:833 | |gene_source=HGNC:833 | ||
|gene_symbol=ATP5C1 | |gene_symbol=ATP5C1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:833 | |hgnc_mgi_id=HGNC:833 | ||
|nearest_ensembl=ENSG00000165629 | |nearest_ensembl=ENSG00000165629 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001001973 |
|nearest_refseq=NM_005174 | |nearest_refseq=NM_005174 | ||
|nearest_unigene=Hs.271135 | |nearest_unigene=Hs.271135 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=7800023 | |start=7800023 | ||
|start_of_center_position=7800029 | |start_of_center_position=7800029 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=38(CCCTTAATACCG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF346098 MA581675 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_103769.1 | |tss_id=hg_103769.1 | ||
Latest revision as of 17:34, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7800029 |
|---|---|
| End of the center position in the TSS region: | 7800030 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF346098 MA581675 |
|---|---|
| Distance: | 14 |
| Num_trans: | 7 |
| All_trans: | LF346098:14 MA581675:14 ENST00000473809.5:16 LF346099:-156 MA581676:-156 LF346100:-253 MA581677:-253 |
TATA-Box annotation
| Distance to TSS: | 11853 |
|---|---|
| Nearest PromoterID: | NM_001001973 |
| Entrez ID: | 509 |
| Nearest Unigene: | Hs.271135 |
| Nearest Refseq: | NM_005174 |
| Nearest Ensembl: | ENSG00000165629 |
| Gene Name: | ATP5F1C |
| Gene Alias: | ATP5C|ATP5C1|ATP5CL1 |
| Gene Description: | ATP synthase F1 subunit gamma |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.288557 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 38(CCCTTAATACCG,+,0.00) |
