Difference between revisions of "TSS:Hg 103949.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=-25316 |entrez_id=222389 |gc_percent=0.706468 |gene_alias=C10orf30 |gene_description=BEN domain containing 7 |gene_name=BEND7 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000438431.1:217 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance_to_tss= | + | |distance=217 |
| + | |distance_to_tss=722 | ||
| + | |end=13528299 | ||
| + | |end_of_center_position=13528293 | ||
|entrez_id=222389 | |entrez_id=222389 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
| Line 9: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165626 | |nearest_ensembl=ENSG00000165626 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001369863 |
|nearest_refseq=NM_152751 | |nearest_refseq=NM_152751 | ||
|nearest_unigene=Hs.498740 | |nearest_unigene=Hs.498740 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=13528285 | ||
| + | |start_of_center_position=13528292 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000438431.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103949.1 | |tss_id=hg_103949.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:38, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 13528292 |
|---|---|
| End of the center position in the TSS region: | 13528293 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000438431.1 |
|---|---|
| Distance: | 217 |
| Num_trans: | 1 |
| All_trans: | ENST00000438431.1:217 |
TATA-Box annotation
| Distance to TSS: | 722 |
|---|---|
| Nearest PromoterID: | NM_001369863 |
| Entrez ID: | 222389 |
| Nearest Unigene: | Hs.498740 |
| Nearest Refseq: | NM_152751 |
| Nearest Ensembl: | ENSG00000165626 |
| Gene Name: | BEND7 |
| Gene Alias: | C10orf30 |
| Gene Description: | BEN domain containing 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
