Difference between revisions of "TSS:Hg 103950.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000417658.5:11 ENST00000378572.8:37 NM_003675:37 AK314814:37 ENST00000320054.4:40 BC002572:78 U51990:87 BC000794:89 KJ897869:159 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=11 |
| − | |distance_to_tss=- | + | |distance_to_tss=-40 |
|end=13586928 | |end=13586928 | ||
|end_of_center_position=13586925 | |end_of_center_position=13586925 | ||
|entrez_id=8559 | |entrez_id=8559 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=PRP18 | + | |gene_alias=PRP18{{!}}hPrp18 |
|gene_description=pre-mRNA processing factor 18 | |gene_description=pre-mRNA processing factor 18 | ||
|gene_id=8559 | |gene_id=8559 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003675 | |nearest_refseq=NM_003675 | ||
|nearest_unigene=Hs.660649 | |nearest_unigene=Hs.660649 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=13586921 | |start=13586921 | ||
|start_of_center_position=13586924 | |start_of_center_position=13586924 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000417658.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103950.1 | |tss_id=hg_103950.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q5T9P7 |
}} | }} | ||
Revision as of 17:38, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 13586924 |
|---|---|
| End of the center position in the TSS region: | 13586925 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000417658.5 |
|---|---|
| Distance: | 11 |
| Num_trans: | 9 |
| All_trans: | ENST00000417658.5:11 ENST00000378572.8:37 NM_003675:37 AK314814:37 ENST00000320054.4:40 BC002572:78 U51990:87 BC000794:89 KJ897869:159 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_003675 |
| Entrez ID: | 8559 |
| Nearest Unigene: | Hs.660649 |
| Nearest Refseq: | NM_003675 |
| Nearest Ensembl: | ENSG00000165630 |
| Gene Name: | pre-mRNA processing factor 18 |
| Gene Alias: | PRP18|hPrp18 |
| Gene Description: | pre-mRNA processing factor 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
