Difference between revisions of "TSS:Hg 103992.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000407572.6:43 NM_001080836:43 NR_147060:43 ENST00000477770.5:94 ENST00000496225.2:165 |
|bA2K17.3= | |bA2K17.3= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| − | |distance= | + | |distance=43 |
| − | |distance_to_tss=- | + | |distance_to_tss=-50 |
|end=14959345 | |end=14959345 | ||
|end_of_center_position=14959338 | |end_of_center_position=14959338 | ||
|entrez_id=644890 | |entrez_id=644890 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=SPATA39 | + | |gene_alias=SPATA39{{!}}bA2K17.3 |
|gene_description=meiosis/spermiogenesis associated 1 | |gene_description=meiosis/spermiogenesis associated 1 | ||
|gene_id=644890 | |gene_id=644890 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:23429 | |hgnc_mgi_id=HGNC:23429 | ||
|nearest_ensembl=ENSG00000197889 | |nearest_ensembl=ENSG00000197889 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_147060 |
|nearest_refseq=NM_001080836 | |nearest_refseq=NM_001080836 | ||
|nearest_unigene=Hs.257249 | |nearest_unigene=Hs.257249 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=14959330 | |start=14959330 | ||
|start_of_center_position=14959337 | |start_of_center_position=14959337 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-38(GCGCATAAAAGC,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000407572.6 NM_001080836 NR_147060 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103992.1 | |tss_id=hg_103992.1 | ||
Revision as of 17:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14959337 |
|---|---|
| End of the center position in the TSS region: | 14959338 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000407572.6 NM_001080836 NR_147060 |
|---|---|
| Distance: | 43 |
| Num_trans: | 5 |
| All_trans: | ENST00000407572.6:43 NM_001080836:43 NR_147060:43 ENST00000477770.5:94 ENST00000496225.2:165 |
TATA-Box annotation
| Distance to TSS: | -50 |
|---|---|
| Nearest PromoterID: | NR_147060 |
| Entrez ID: | 644890 |
| Nearest Unigene: | Hs.257249 |
| Nearest Refseq: | NM_001080836 |
| Nearest Ensembl: | ENSG00000197889 |
| Gene Name: | meiosis/spermiogenesis associated 1 |
| Gene Alias: | SPATA39|bA2K17.3 |
| Gene Description: | meiosis/spermiogenesis associated 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -38(GCGCATAAAAGC,-,0.00) |
