Difference between revisions of "TSS:Hg 103994.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000477770.5:0 ENST00000407572. | + | |all_trans=ENST00000477770.5:0 ENST00000407572.6:-44 NM_001080836:-44 NR_147060:-44 ENST00000496225.2:69 |
|bA2K17.3= | |bA2K17.3= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=48 |
|end=14959441 | |end=14959441 | ||
|end_of_center_position=14959437 | |end_of_center_position=14959437 | ||
|entrez_id=644890 | |entrez_id=644890 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
| − | |gene_alias=SPATA39 | + | |gene_alias=SPATA39{{!}}bA2K17.3 |
|gene_description=meiosis/spermiogenesis associated 1 | |gene_description=meiosis/spermiogenesis associated 1 | ||
|gene_id=644890 | |gene_id=644890 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_001080836 | |nearest_refseq=NM_001080836 | ||
|nearest_unigene=Hs.257249 | |nearest_unigene=Hs.257249 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=14959431 | |start=14959431 | ||
|start_of_center_position=14959436 | |start_of_center_position=14959436 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000477770.5 | + | |transcript_name=ENST00000477770.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103994.1 | |tss_id=hg_103994.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:39, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 14959436 |
|---|---|
| End of the center position in the TSS region: | 14959437 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000477770.5 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENST00000477770.5:0 ENST00000407572.6:-44 NM_001080836:-44 NR_147060:-44 ENST00000496225.2:69 |
TATA-Box annotation
| Distance to TSS: | 48 |
|---|---|
| Nearest PromoterID: | NM_001080836 |
| Entrez ID: | 644890 |
| Nearest Unigene: | Hs.257249 |
| Nearest Refseq: | NM_001080836 |
| Nearest Ensembl: | ENSG00000197889 |
| Gene Name: | meiosis/spermiogenesis associated 1 |
| Gene Alias: | SPATA39|bA2K17.3 |
| Gene Description: | meiosis/spermiogenesis associated 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
