Difference between revisions of "TSS:Hg 104001.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000378203.5:0 ENST00000616640.1 | + | |all_trans=ENST00000378203.5:0 ENST00000616640.1:0 NM_001265601:0 AK223418:0 ENST00000378201.6:12 ENST00000451677.1:34 ENST00000378202.5:128 ENST00000378197.5:152 NM_183005:152 NM_001097590:152 NM_006414:152 AK057006:179 U77664:182 BC029494:196 ENST00000441850.1:217 AF079567:421 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 12: | Line 12: | ||
|gene_description=ribonuclease P/MRP subunit p38 | |gene_description=ribonuclease P/MRP subunit p38 | ||
|gene_id=10557 | |gene_id=10557 | ||
| − | |gene_name=ribonuclease P/MRP | + | |gene_name=ribonuclease P/MRP subunit p38 |
|gene_source=HGNC:30329 | |gene_source=HGNC:30329 | ||
|gene_symbol=RPP38 | |gene_symbol=RPP38 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_006414 | |nearest_refseq=NM_006414 | ||
|nearest_unigene=Hs.94986 | |nearest_unigene=Hs.94986 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=15097177 | |start=15097177 | ||
|start_of_center_position=15097190 | |start_of_center_position=15097190 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-28(GAGTCTAAAAGA,-,0.00) |
| − | |transcript_name=ENST00000378203.5 ENST00000616640.1 | + | |transcript_name=ENST00000378203.5 ENST00000616640.1 NM_001265601 AK223418 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104001.1 | |tss_id=hg_104001.1 | ||
Revision as of 17:40, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 15097190 |
|---|---|
| End of the center position in the TSS region: | 15097191 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378203.5 ENST00000616640.1 NM_001265601 AK223418 |
|---|---|
| Distance: | 0 |
| Num_trans: | 16 |
| All_trans: | ENST00000378203.5:0 ENST00000616640.1:0 NM_001265601:0 AK223418:0 ENST00000378201.6:12 ENST00000451677.1:34 ENST00000378202.5:128 ENST00000378197.5:152 NM_183005:152 NM_001097590:152 NM_006414:152 AK057006:179 U77664:182 BC029494:196 ENST00000441850.1:217 AF079567:421 |
TATA-Box annotation
| Distance to TSS: | 10 |
|---|---|
| Nearest PromoterID: | NM_001265601 |
| Entrez ID: | 10557 |
| Nearest Unigene: | Hs.94986 |
| Nearest Refseq: | NM_006414 |
| Nearest Ensembl: | ENSG00000152464 |
| Gene Name: | ribonuclease P/MRP subunit p38 |
| Gene Alias: | - |
| Gene Description: | ribonuclease P/MRP subunit p38 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -28(GAGTCTAAAAGA,-,0.00) |
