Difference between revisions of "TSS:Hg 104054.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HEL113= | |HEL113= | ||
| − | |all_trans=ENST00000478746 | + | |all_trans=ENST00000478746.1:-138 BC066956:-182 ENST00000497849.1:201 LF205547:252 MA441124:252 LF211788:-359 MA447365:-359 LQ740465:-394 ENST00000544301.7:-412 NM_003380:-412 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=-138 | |distance=-138 | ||
| − | |distance_to_tss= | + | |distance_to_tss=419 |
|end=17228668 | |end=17228668 | ||
|end_of_center_position=17228661 | |end_of_center_position=17228661 | ||
|entrez_id=7431 | |entrez_id=7431 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=vimentin | |gene_description=vimentin | ||
|gene_id=7431 | |gene_id=7431 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=17228660 | |start_of_center_position=17228660 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000478746 | + | |transcript_name=ENST00000478746.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104054.1 | |tss_id=hg_104054.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1B0GTT5 |
}} | }} | ||
Revision as of 17:41, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 17228660 |
|---|---|
| End of the center position in the TSS region: | 17228661 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000478746.1 |
|---|---|
| Distance: | -138 |
| Num_trans: | 10 |
| All_trans: | ENST00000478746.1:-138 BC066956:-182 ENST00000497849.1:201 LF205547:252 MA441124:252 LF211788:-359 MA447365:-359 LQ740465:-394 ENST00000544301.7:-412 NM_003380:-412 |
TATA-Box annotation
| Distance to TSS: | 419 |
|---|---|
| Nearest PromoterID: | NM_003380 |
| Entrez ID: | 7431 |
| Nearest Unigene: | Hs.455493 |
| Nearest Refseq: | NM_003380 |
| Nearest Ensembl: | ENSG00000026025 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | vimentin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
