Difference between revisions of "TSS:Hg 104057.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000224237.9:0 ENST00000487938.5:0 | + | |all_trans=ENST00000224237.9:0 ENST00000487938.5:0 AK222507:0 AK222602:0 EU794672:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 X16478:0 AK222482:0 ENST00000485947.1:4 AF328728:8 BC030573:12 BC000163:12 GQ900939:12 Z19554:17 LF346167:91 MA581744:91 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 LF346169:219 MA581746:219 LF346170:325 MA581747:325 LF205547:-348 MA441124:-348 ENST00000497849.1:-399 LF346172:421 MA581749:421 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |num_trans= | + | |num_trans=36 |
|species=human | |species=human | ||
|start=17229267 | |start=17229267 | ||
|start_of_center_position=17229277 | |start_of_center_position=17229277 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(GGTTATAAAAAC,-,0.00) |
| − | |transcript_name=ENST00000224237.9 ENST00000487938.5 | + | |transcript_name=ENST00000224237.9 ENST00000487938.5 AK222507 AK222602 EU794672 AK056766 AK091813 AK097336 AK098444 X16478 AK222482 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104057.1 | |tss_id=hg_104057.1 | ||
Revision as of 17:41, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 17229277 |
|---|---|
| End of the center position in the TSS region: | 17229278 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000224237.9 ENST00000487938.5 AK222507 AK222602 EU794672 AK056766 AK091813 AK097336 AK098444 X16478 AK222482 |
|---|---|
| Distance: | 0 |
| Num_trans: | 36 |
| All_trans: | ENST00000224237.9:0 ENST00000487938.5:0 AK222507:0 AK222602:0 EU794672:0 AK056766:0 AK091813:0 AK097336:0 AK098444:0 X16478:0 AK222482:0 ENST00000485947.1:4 AF328728:8 BC030573:12 BC000163:12 GQ900939:12 Z19554:17 LF346167:91 MA581744:91 X56134:93 AK290643:111 AB590763:133 CU674070:135 KJ892377:135 CR407690:136 KU178388:136 KU178389:136 LF346169:219 MA581746:219 LF346170:325 MA581747:325 LF205547:-348 MA441124:-348 ENST00000497849.1:-399 LF346172:421 MA581749:421 |
TATA-Box annotation
| Distance to TSS: | 708 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | vimentin |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(GGTTATAAAAAC,-,0.00) |
