Difference between revisions of "TSS:Hg 104066.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=-4778 |entrez_id=100507347 |gc_percent=0.512438 |gene_alias=- |gene_description=VIM antisense RNA 1 |gene_name=VIM-AS1 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF346183:-42 MA581760:-42 LF346185:378 MA581762:378 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=-42 | ||
|distance_to_tss=-4778 | |distance_to_tss=-4778 | ||
| + | |end=17234788 | ||
| + | |end_of_center_position=17234764 | ||
|entrez_id=100507347 | |entrez_id=100507347 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NR_108060 | |nearest_refseq=NR_108060 | ||
|nearest_unigene=Hs.740502 | |nearest_unigene=Hs.740502 | ||
| − | |tata_box= | + | |num_trans=4 |
| + | |species=human | ||
| + | |start=17234738 | ||
| + | |start_of_center_position=17234763 | ||
| + | |strand=+ | ||
| + | |tata_box=40(TGCCCTTAAAGG,-,0.00),41(GCCCTTAAAGGA,-,0.00) | ||
| + | |transcript_name=LF346183 MA581760 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104066.1 | |tss_id=hg_104066.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:41, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17234763 |
|---|---|
| End of the center position in the TSS region: | 17234764 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF346183 MA581760 |
|---|---|
| Distance: | -42 |
| Num_trans: | 4 |
| All_trans: | LF346183:-42 MA581760:-42 LF346185:378 MA581762:378 |
TATA-Box annotation
| Distance to TSS: | -4778 |
|---|---|
| Nearest PromoterID: | NR_108061 |
| Entrez ID: | 100507347 |
| Nearest Unigene: | Hs.740502 |
| Nearest Refseq: | NR_108060 |
| Nearest Ensembl: | ENSG00000229124 |
| Gene Name: | VIM-AS1 |
| Gene Alias: | - |
| Gene Description: | VIM antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 40(TGCCCTTAAAGG,-,0.00),41(GCCCTTAAAGGA,-,0.00) |
