Difference between revisions of "TSS:Hg 104101.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|STAM1= | |STAM1= | ||
| − | |all_trans=ENST00000486183 | + | |all_trans=ENST00000486183.1:-142 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-142 | |distance=-142 | ||
| − | |distance_to_tss= | + | |distance_to_tss=40778 |
|end=17684931 | |end=17684931 | ||
|end_of_center_position=17684929 | |end_of_center_position=17684929 | ||
|entrez_id=8027 | |entrez_id=8027 | ||
|gc_percent=0.308458 | |gc_percent=0.308458 | ||
| − | |gene_alias=STAM-1 | + | |gene_alias=STAM-1{{!}}STAM1 |
|gene_description=signal transducing adaptor molecule | |gene_description=signal transducing adaptor molecule | ||
|gene_id=8027 | |gene_id=8027 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:11357 | |hgnc_mgi_id=HGNC:11357 | ||
|nearest_ensembl=ENSG00000136738 | |nearest_ensembl=ENSG00000136738 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001324283 |
|nearest_refseq=NM_003473 | |nearest_refseq=NM_003473 | ||
|nearest_unigene=Hs.335391 | |nearest_unigene=Hs.335391 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=17684926 | |start=17684926 | ||
|start_of_center_position=17684928 | |start_of_center_position=17684928 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=87(TGCTTTTTAAGA,-,0.00) |
| − | |transcript_name=ENST00000486183 | + | |transcript_name=ENST00000486183.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104101.1 | |tss_id=hg_104101.1 | ||
Revision as of 17:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17684928 |
|---|---|
| End of the center position in the TSS region: | 17684929 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000486183.1 |
|---|---|
| Distance: | -142 |
| Num_trans: | 1 |
| All_trans: | ENST00000486183.1:-142 |
TATA-Box annotation
| Distance to TSS: | 40778 |
|---|---|
| Nearest PromoterID: | NM_001324283 |
| Entrez ID: | 8027 |
| Nearest Unigene: | Hs.335391 |
| Nearest Refseq: | NM_003473 |
| Nearest Ensembl: | ENSG00000136738 |
| Gene Name: | signal transducing adaptor molecule |
| Gene Alias: | STAM-1|STAM1 |
| Gene Description: | signal transducing adaptor molecule |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.308458 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(TGCTTTTTAAGA,-,0.00) |
