Difference between revisions of "TSS:Hg 104116.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CAVB2= | |CAVB2= | ||
|MYSB= | |MYSB= | ||
| − | |all_trans=ENST00000324631. | + | |all_trans=ENST00000324631.13:0 NM_001167945:0 NM_201572:0 NM_201571:0 NM_201597:0 NM_201593:0 NM_201596:0 S60415:247 BC136409:284 KJ896530:305 AF137376:306 ENST00000352115.10:307 ENST00000377328.5:307 AF423191:307 AY393860:307 AY675091:307 ENST00000468177.1:317 AK296471:340 ENST00000467034.1:362 AK311694:362 ENST00000643096.2:383 ENST00000645287.1:383 AK307526:383 ENST00000644004.1:451 AK293837:451 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-2 |
|end=18140430 | |end=18140430 | ||
|end_of_center_position=18140422 | |end_of_center_position=18140422 | ||
|entrez_id=783 | |entrez_id=783 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=CACNLB2 | + | |gene_alias=CACNLB2{{!}}CAVB2{{!}}MYSB |
|gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | |gene_description=calcium voltage-gated channel auxiliary subunit beta 2 | ||
|gene_id=783 | |gene_id=783 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_000724 | |nearest_refseq=NM_000724 | ||
|nearest_unigene=Hs.59093 | |nearest_unigene=Hs.59093 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=18140413 | |start=18140413 | ||
|start_of_center_position=18140421 | |start_of_center_position=18140421 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000324631. | + | |transcript_name=ENST00000324631.13 NM_001167945 NM_201572 NM_201571 NM_201597 NM_201593 NM_201596 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104116.1 | |tss_id=hg_104116.1 | ||
Revision as of 17:42, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 18140421 |
|---|---|
| End of the center position in the TSS region: | 18140422 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000324631.13 NM_001167945 NM_201572 NM_201571 NM_201597 NM_201593 NM_201596 |
|---|---|
| Distance: | 0 |
| Num_trans: | 25 |
| All_trans: | ENST00000324631.13:0 NM_001167945:0 NM_201572:0 NM_201571:0 NM_201597:0 NM_201593:0 NM_201596:0 S60415:247 BC136409:284 KJ896530:305 AF137376:306 ENST00000352115.10:307 ENST00000377328.5:307 AF423191:307 AY393860:307 AY675091:307 ENST00000468177.1:317 AK296471:340 ENST00000467034.1:362 AK311694:362 ENST00000643096.2:383 ENST00000645287.1:383 AK307526:383 ENST00000644004.1:451 AK293837:451 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_201596 |
| Entrez ID: | 783 |
| Nearest Unigene: | Hs.59093 |
| Nearest Refseq: | NM_000724 |
| Nearest Ensembl: | ENSG00000165995 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Alias: | CACNLB2|CAVB2|MYSB |
| Gene Description: | calcium voltage-gated channel auxiliary subunit beta 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
