Difference between revisions of "TSS:Hg 104167.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000377252.5:22 NM_032812:22 NM_001282736:22 AK304591:27 AY358486:33 ENST00000377242.7:-157 BC012885:427 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance= | + | |distance=22 |
| − | |distance_to_tss=- | + | |distance_to_tss=-29 |
|end=19816410 | |end=19816410 | ||
|end_of_center_position=19816403 | |end_of_center_position=19816403 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:21013 | |hgnc_mgi_id=HGNC:21013 | ||
|nearest_ensembl=ENSG00000120594 | |nearest_ensembl=ENSG00000120594 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_032812 |
|nearest_refseq=NM_032812 | |nearest_refseq=NM_032812 | ||
|nearest_unigene=Hs.99472 | |nearest_unigene=Hs.99472 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=19816395 | |start=19816395 | ||
|start_of_center_position=19816402 | |start_of_center_position=19816402 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-7(TTTTTTAAACAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000377252.5 NM_032812 NM_001282736 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104167.1 | |tss_id=hg_104167.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6UX71 |
}} | }} | ||
Revision as of 17:44, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 19816402 |
|---|---|
| End of the center position in the TSS region: | 19816403 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000377252.5 NM_032812 NM_001282736 |
|---|---|
| Distance: | 22 |
| Num_trans: | 7 |
| All_trans: | ENST00000377252.5:22 NM_032812:22 NM_001282736:22 AK304591:27 AY358486:33 ENST00000377242.7:-157 BC012885:427 |
TATA-Box annotation
| Distance to TSS: | -29 |
|---|---|
| Nearest PromoterID: | NM_032812 |
| Entrez ID: | 84898 |
| Nearest Unigene: | Hs.99472 |
| Nearest Refseq: | NM_032812 |
| Nearest Ensembl: | ENSG00000120594 |
| Gene Name: | plexin domain containing 2 |
| Gene Alias: | TEM7R |
| Gene Description: | plexin domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.522388 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -7(TTTTTTAAACAC,+,0.00) |
