Difference between revisions of "TSS:Hg 104169.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AY358486:-18 AK304591:-24 ENST00000377252.5:-29 NM_032812:-29 NM_001282736:-29 ENST00000377242.7:-222 BC012885:372 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-18 | |distance=-18 | ||
| − | |distance_to_tss= | + | |distance_to_tss=31 |
|end=19816465 | |end=19816465 | ||
|end_of_center_position=19816463 | |end_of_center_position=19816463 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:21013 | |hgnc_mgi_id=HGNC:21013 | ||
|nearest_ensembl=ENSG00000120594 | |nearest_ensembl=ENSG00000120594 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282736 |
|nearest_refseq=NM_032812 | |nearest_refseq=NM_032812 | ||
|nearest_unigene=Hs.99472 | |nearest_unigene=Hs.99472 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=19816460 | |start=19816460 | ||
|start_of_center_position=19816462 | |start_of_center_position=19816462 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-67(TTTTTTAAACAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AY358486 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104169.1 | |tss_id=hg_104169.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 17:44, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 19816462 |
|---|---|
| End of the center position in the TSS region: | 19816463 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AY358486 |
|---|---|
| Distance: | -18 |
| Num_trans: | 7 |
| All_trans: | AY358486:-18 AK304591:-24 ENST00000377252.5:-29 NM_032812:-29 NM_001282736:-29 ENST00000377242.7:-222 BC012885:372 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_001282736 |
| Entrez ID: | 84898 |
| Nearest Unigene: | Hs.99472 |
| Nearest Refseq: | NM_032812 |
| Nearest Ensembl: | ENSG00000120594 |
| Gene Name: | plexin domain containing 2 |
| Gene Alias: | TEM7R |
| Gene Description: | plexin domain containing 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -67(TTTTTTAAACAC,+,0.00) |
