Difference between revisions of "TSS:Hg 10420.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 12: | Line 12: | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss=- | + | |distance_to_tss=-119 |
|end=13585343 | |end=13585343 | ||
| + | |end_of_center_position=13585342 | ||
|entrez_id=10630 | |entrez_id=10630 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=AGGRUS | + | |gene_alias=AGGRUS{{!}}GP36{{!}}GP40{{!}}Gp38{{!}}HT1A-1{{!}}OTS8{{!}}PA2.26{{!}}T1A{{!}}T1A-2{{!}}T1A2{{!}}TI1A |
|gene_description=podoplanin | |gene_description=podoplanin | ||
|gene_name=PDPN | |gene_name=PDPN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000162493 | |nearest_ensembl=ENSG00000162493 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001006625 |
|nearest_refseq=NM_006474 | |nearest_refseq=NM_006474 | ||
|nearest_unigene=Hs.468675 | |nearest_unigene=Hs.468675 | ||
| Line 28: | Line 29: | ||
|species=human | |species=human | ||
|start=13585339 | |start=13585339 | ||
| + | |start_of_center_position=13585341 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CCCTATAAAAAG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:45, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 13585341 |
|---|---|
| End of the center position in the TSS region: | 13585342 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -119 |
|---|---|
| Nearest PromoterID: | NM_001006625 |
| Entrez ID: | 10630 |
| Nearest Unigene: | Hs.468675 |
| Nearest Refseq: | NM_006474 |
| Nearest Ensembl: | ENSG00000162493 |
| Gene Name: | PDPN |
| Gene Alias: | AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A |
| Gene Description: | podoplanin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CCCTATAAAAAG,-,0.00) |
