Difference between revisions of "TSS:Hg 104238.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=LF212870:378 MA448447:378 LF212868:-436 MA448445:-436 ENST00000602395.1:-447 ENST00000471350.1:-476 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=378 |
| − | |distance_to_tss= | + | |distance_to_tss=-2349 |
|end=22318753 | |end=22318753 | ||
| − | |entrez_id= | + | |end_of_center_position=22318751 |
| + | |entrez_id=648 | ||
|gc_percent=0.393035 | |gc_percent=0.393035 | ||
| − | |gene_alias=- | + | |gene_alias=FLVI2/BMI1{{!}}PCGF4{{!}}RNF51{{!}}flvi-2/bmi-1 |
| − | |gene_description= | + | |gene_description=BMI1 proto-oncogene, polycomb ring finger |
|gene_id=100532731 23412 | |gene_id=100532731 23412 | ||
| − | |gene_name= | + | |gene_name=BMI1 |
|gene_source=HGNC:23332 HGNC:48326 | |gene_source=HGNC:23332 HGNC:48326 | ||
|gene_symbol=COMMD3 COMMD3-BMI1 | |gene_symbol=COMMD3 COMMD3-BMI1 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23332 HGNC:48326 | |hgnc_mgi_id=HGNC:23332 HGNC:48326 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000168283 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_005180 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_005180 |
|nearest_unigene=Hs.380403 | |nearest_unigene=Hs.380403 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=22318747 | |start=22318747 | ||
| + | |start_of_center_position=22318750 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF212870 MA448447 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104238.1 | |tss_id=hg_104238.1 | ||
Latest revision as of 17:45, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 22318750 |
|---|---|
| End of the center position in the TSS region: | 22318751 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF212870 MA448447 |
|---|---|
| Distance: | 378 |
| Num_trans: | 6 |
| All_trans: | LF212870:378 MA448447:378 LF212868:-436 MA448445:-436 ENST00000602395.1:-447 ENST00000471350.1:-476 |
TATA-Box annotation
| Distance to TSS: | -2349 |
|---|---|
| Nearest PromoterID: | NM_005180 |
| Entrez ID: | 648 |
| Nearest Unigene: | Hs.380403 |
| Nearest Refseq: | NM_005180 |
| Nearest Ensembl: | ENSG00000168283 |
| Gene Name: | BMI1 |
| Gene Alias: | FLVI2/BMI1|PCGF4|RNF51|flvi-2/bmi-1 |
| Gene Description: | BMI1 proto-oncogene, polycomb ring finger |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.393035 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
