Difference between revisions of "TSS:Hg 104256.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=5899 |
|end=22351399 | |end=22351399 | ||
|end_of_center_position=22351396 | |end_of_center_position=22351396 | ||
|entrez_id=9576 | |entrez_id=9576 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=CT141 | + | |gene_alias=CT141{{!}}Repro-SA-1{{!}}pf16 |
|gene_description=sperm associated antigen 6 | |gene_description=sperm associated antigen 6 | ||
|gene_name=SPAG6 | |gene_name=SPAG6 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000077327 | |nearest_ensembl=ENSG00000077327 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_172242 |
|nearest_refseq=NM_012443 | |nearest_refseq=NM_012443 | ||
|nearest_unigene=Hs.655170 | |nearest_unigene=Hs.655170 | ||
| Line 23: | Line 23: | ||
|start_of_center_position=22351395 | |start_of_center_position=22351395 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-56(CTCTTTAAACGC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 17:46, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22351395 |
|---|---|
| End of the center position in the TSS region: | 22351396 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 5899 |
|---|---|
| Nearest PromoterID: | NM_172242 |
| Entrez ID: | 9576 |
| Nearest Unigene: | Hs.655170 |
| Nearest Refseq: | NM_012443 |
| Nearest Ensembl: | ENSG00000077327 |
| Gene Name: | SPAG6 |
| Gene Alias: | CT141|Repro-SA-1|pf16 |
| Gene Description: | sperm associated antigen 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -56(CTCTTTAAACGC,+,0.00) |
