Difference between revisions of "TSS:Hg 104292.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|OTDC1= | |OTDC1= | ||
| + | |all_trans=MN309065:161 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=161 |
|distance_to_tss=117828 | |distance_to_tss=117828 | ||
|end=23557100 | |end=23557100 | ||
| Line 9: | Line 10: | ||
|entrez_id=220213 | |entrez_id=220213 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=DUBA7 | + | |gene_alias=DUBA7{{!}}OTDC1 |
|gene_description=OTU deubiquitinase 1 | |gene_description=OTU deubiquitinase 1 | ||
|gene_name=OTUD1 | |gene_name=OTUD1 | ||
| Line 17: | Line 18: | ||
|nearest_refseq=NM_001145373 | |nearest_refseq=NM_001145373 | ||
|nearest_unigene=Hs.499042 | |nearest_unigene=Hs.499042 | ||
| − | |num_trans= | + | |num_trans=1 |
|species=human | |species=human | ||
|start=23557093 | |start=23557093 | ||
|start_of_center_position=23557096 | |start_of_center_position=23557096 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GCATAAATAGAC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=MN309065 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104292.1 | |tss_id=hg_104292.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:47, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23557096 |
|---|---|
| End of the center position in the TSS region: | 23557097 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | MN309065 |
|---|---|
| Distance: | 161 |
| Num_trans: | 1 |
| All_trans: | MN309065:161 |
TATA-Box annotation
| Distance to TSS: | 117828 |
|---|---|
| Nearest PromoterID: | NM_001145373 |
| Entrez ID: | 220213 |
| Nearest Unigene: | Hs.499042 |
| Nearest Refseq: | NM_001145373 |
| Nearest Ensembl: | ENSG00000165312 |
| Gene Name: | OTUD1 |
| Gene Alias: | DUBA7|OTDC1 |
| Gene Description: | OTU deubiquitinase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCATAAATAGAC,+,0.00) |
