Difference between revisions of "TSS:Hg 104345.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000396446.5:0 ENST00000396445.5:0 ENST00000376451.4:0 NM_001282770 | + | |all_trans=ENST00000396446.5:0 ENST00000396445.5:0 ENST00000376451.4:0 NM_001282770:0 AK300422:0 BX648451:0 BX640796:0 BC098577:10 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-17 |
|end=24466541 | |end=24466541 | ||
|end_of_center_position=24466515 | |end_of_center_position=24466515 | ||
|entrez_id=56243 | |entrez_id=56243 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
| − | |gene_alias=SKT | + | |gene_alias=ETL4{{!}}SKT |
|gene_description=KIAA1217 | |gene_description=KIAA1217 | ||
|gene_id=56243 | |gene_id=56243 | ||
| Line 15: | Line 15: | ||
|gene_source=HGNC:25428 | |gene_source=HGNC:25428 | ||
|gene_symbol=KIAA1217 | |gene_symbol=KIAA1217 | ||
| − | |gene_synonyms=DKFZP761L0424 SKT | + | |gene_synonyms=DKFZP761L0424 ETL4 SKT |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:25428 | |hgnc_mgi_id=HGNC:25428 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_019590 | |nearest_refseq=NM_019590 | ||
|nearest_unigene=Hs.445885 | |nearest_unigene=Hs.445885 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=24466487 | |start=24466487 | ||
|start_of_center_position=24466514 | |start_of_center_position=24466514 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000396446.5 ENST00000396445.5 ENST00000376451.4 NM_001282770 | + | |transcript_name=ENST00000396446.5 ENST00000396445.5 ENST00000376451.4 NM_001282770 AK300422 BX648451 BX640796 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104345.1 | |tss_id=hg_104345.1 | ||
Revision as of 17:48, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 24466514 |
|---|---|
| End of the center position in the TSS region: | 24466515 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000396446.5 ENST00000396445.5 ENST00000376451.4 NM_001282770 AK300422 BX648451 BX640796 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000396446.5:0 ENST00000396445.5:0 ENST00000376451.4:0 NM_001282770:0 AK300422:0 BX648451:0 BX640796:0 BC098577:10 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_001282770 |
| Entrez ID: | 56243 |
| Nearest Unigene: | Hs.445885 |
| Nearest Refseq: | NM_019590 |
| Nearest Ensembl: | ENSG00000120549 |
| Gene Name: | KIAA1217 |
| Gene Alias: | ETL4|SKT |
| Gene Description: | KIAA1217 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.452736 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
