Difference between revisions of "TSS:Hg 10443.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000427824 | + | |all_trans=ENST00000427824.1:-17 BC045184:-18 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance=-17 | |distance=-17 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-484 |
|end=15409416 | |end=15409416 | ||
|end_of_center_position=15409405 | |end_of_center_position=15409405 | ||
| Line 17: | Line 17: | ||
|nearest_refseq=NM_024329 | |nearest_refseq=NM_024329 | ||
|nearest_unigene=Hs.465374 | |nearest_unigene=Hs.465374 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=15409392 | |start=15409392 | ||
|start_of_center_position=15409404 | |start_of_center_position=15409404 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000427824 | + | |transcript_name=ENST00000427824.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10443.1 | |tss_id=hg_10443.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:50, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 15409404 |
|---|---|
| End of the center position in the TSS region: | 15409405 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000427824.1 |
|---|---|
| Distance: | -17 |
| Num_trans: | 2 |
| All_trans: | ENST00000427824.1:-17 BC045184:-18 |
TATA-Box annotation
| Distance to TSS: | -484 |
|---|---|
| Nearest PromoterID: | NM_024329 |
| Entrez ID: | 79180 |
| Nearest Unigene: | Hs.465374 |
| Nearest Refseq: | NM_024329 |
| Nearest Ensembl: | ENSG00000142634 |
| Gene Name: | EFHD2 |
| Gene Alias: | SWS1 |
| Gene Description: | EF-hand domain family member D2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
