Difference between revisions of "TSS:Hg 104452.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=42749 |entrez_id=374308 |gc_percent=0.467662 |gene_alias=PTR |gene_description=patched domain containing 3 |gene_name=PTCHD3 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=NA | ||
|distance_to_tss=42749 | |distance_to_tss=42749 | ||
| + | |end=27371622 | ||
| + | |end_of_center_position=27371620 | ||
|entrez_id=374308 | |entrez_id=374308 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_001034842 | |nearest_refseq=NM_001034842 | ||
|nearest_unigene=Hs.631832 | |nearest_unigene=Hs.631832 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=27371616 | ||
| + | |start_of_center_position=27371619 | ||
| + | |strand=+ | ||
| + | |tata_box=-33(GGCTTTATAAGG,-,0.00),-31(CTTTATAAGGGG,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_104452.1 | |tss_id=hg_104452.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:50, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 27371619 |
|---|---|
| End of the center position in the TSS region: | 27371620 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 42749 |
|---|---|
| Nearest PromoterID: | NM_001034842 |
| Entrez ID: | 374308 |
| Nearest Unigene: | Hs.631832 |
| Nearest Refseq: | NM_001034842 |
| Nearest Ensembl: | ENSG00000182077 |
| Gene Name: | PTCHD3 |
| Gene Alias: | PTR |
| Gene Description: | patched domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GGCTTTATAAGG,-,0.00),-31(CTTTATAAGGGG,+,0.00) |
