Difference between revisions of "TSS:Hg 104509.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NR_120652:-32 AK058127:38 ENST00000456082.1:48 | + | |all_trans=ENST00000644731.1:0 ENST00000643204.1:22 NR_120652:-32 AK058127:38 ENST00000456082.1:48 ENST00000646289.1:-176 ENST00000647111.1:216 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=39 | |distance_to_tss=39 | ||
|end=28743697 | |end=28743697 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1517 | |gene_description=long intergenic non-protein coding RNA 1517 | ||
| − | |gene_id= | + | |gene_id=283080 |
|gene_name=long intergenic non-protein coding RNA 1517 | |gene_name=long intergenic non-protein coding RNA 1517 | ||
|gene_source=HGNC:51212 | |gene_source=HGNC:51212 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_120652 | |nearest_refseq=NR_120652 | ||
|nearest_unigene=Hs.224866 | |nearest_unigene=Hs.224866 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=28743681 | |start=28743681 | ||
|start_of_center_position=28743689 | |start_of_center_position=28743689 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=13(CCCTCTTAGAGG,-,0.00),14(CCTCTTAGAGGT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000644731.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104509.1 | |tss_id=hg_104509.1 | ||
Revision as of 17:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 28743689 |
|---|---|
| End of the center position in the TSS region: | 28743690 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000644731.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000644731.1:0 ENST00000643204.1:22 NR_120652:-32 AK058127:38 ENST00000456082.1:48 ENST00000646289.1:-176 ENST00000647111.1:216 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NR_120652 |
| Entrez ID: | 101929218 |
| Nearest Unigene: | Hs.224866 |
| Nearest Refseq: | NR_120652 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 1517 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1517 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 13(CCCTCTTAGAGG,-,0.00),14(CCTCTTAGAGGT,+,0.00) |
