Difference between revisions of "TSS:Hg 104510.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK058127:13 ENST00000456082.1:23 | + | |all_trans=ENST00000643204.1:0 AK058127:13 ENST00000456082.1:23 ENST00000644731.1:-33 NR_120652:-66 ENST00000647111.1:191 ENST00000646289.1:-210 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
|distance_to_tss=69 | |distance_to_tss=69 | ||
|end=28743722 | |end=28743722 | ||
| Line 11: | Line 11: | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 1517 | |gene_description=long intergenic non-protein coding RNA 1517 | ||
| − | |gene_name=LINC01517 | + | |gene_id=283080 |
| + | |gene_name=long intergenic non-protein coding RNA 1517 | ||
| + | |gene_source=HGNC:51212 | ||
| + | |gene_symbol=LINC01517 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51212 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_120652 | |nearest_promoter_id=NR_120652 | ||
|nearest_refseq=NR_120652 | |nearest_refseq=NR_120652 | ||
|nearest_unigene=Hs.224866 | |nearest_unigene=Hs.224866 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=28743715 | |start=28743715 | ||
|start_of_center_position=28743718 | |start_of_center_position=28743718 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-17(CCCTCTTAGAGG,-,0.00),-16(CCTCTTAGAGGT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000643204.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104510.1 | |tss_id=hg_104510.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 17:52, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 28743718 |
|---|---|
| End of the center position in the TSS region: | 28743719 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000643204.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000643204.1:0 AK058127:13 ENST00000456082.1:23 ENST00000644731.1:-33 NR_120652:-66 ENST00000647111.1:191 ENST00000646289.1:-210 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NR_120652 |
| Entrez ID: | 101929218 |
| Nearest Unigene: | Hs.224866 |
| Nearest Refseq: | NR_120652 |
| Nearest Ensembl: | |
| Gene Name: | long intergenic non-protein coding RNA 1517 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 1517 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -17(CCCTCTTAGAGG,-,0.00),-16(CCTCTTAGAGGT,+,0.00) |
