Difference between revisions of "TSS:Hg 10456.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MCH6= | |MCH6= | ||
|PPP1R56= | |PPP1R56= | ||
| − | |all_trans=ENST00000400777.7 | + | |all_trans=ENST00000400777.7:-30 ENST00000474305.2:-38 AY732490:-38 AF093130:-38 AB020979:-38 AF110376:-38 AJ781267:-38 BT006911:-38 CU675417:-39 DQ891693:-40 U56390:-41 HQ447255:-43 KJ890829:-43 AB590140:-43 BC002452:-44 ENST00000333868.10:-53 ENST00000546969.1:-53 NM_001229:-53 AK292080:-54 ENST00000440484.1:-55 AB015653:-59 AK292111:-59 U60521:-83 BC006463:-133 ENST00000348549.9:-185 ENST00000546424.5:-283 NM_001278054:-283 NR_102733:-283 NR_102732:-283 AB209147:-283 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-30 | |distance=-30 | ||
| − | |distance_to_tss= | + | |distance_to_tss=56 |
|end=15524162 | |end=15524162 | ||
|end_of_center_position=15524159 | |end_of_center_position=15524159 | ||
|entrez_id=842 | |entrez_id=842 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=APAF-3 | + | |gene_alias=APAF-3{{!}}APAF3{{!}}ICE-LAP6{{!}}MCH6{{!}}PPP1R56 |
|gene_description=caspase 9 | |gene_description=caspase 9 | ||
|gene_id=842 | |gene_id=842 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:1511 | |hgnc_mgi_id=HGNC:1511 | ||
|nearest_ensembl=ENSG00000132906 | |nearest_ensembl=ENSG00000132906 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001229 |
|nearest_refseq=NM_001229 | |nearest_refseq=NM_001229 | ||
|nearest_unigene=Hs.329502 | |nearest_unigene=Hs.329502 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=15524155 | |start=15524155 | ||
|start_of_center_position=15524158 | |start_of_center_position=15524158 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000400777.7 | + | |transcript_name=ENST00000400777.7 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10456.1 | |tss_id=hg_10456.1 | ||
Revision as of 17:53, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15524158 |
|---|---|
| End of the center position in the TSS region: | 15524159 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000400777.7 |
|---|---|
| Distance: | -30 |
| Num_trans: | 30 |
| All_trans: | ENST00000400777.7:-30 ENST00000474305.2:-38 AY732490:-38 AF093130:-38 AB020979:-38 AF110376:-38 AJ781267:-38 BT006911:-38 CU675417:-39 DQ891693:-40 U56390:-41 HQ447255:-43 KJ890829:-43 AB590140:-43 BC002452:-44 ENST00000333868.10:-53 ENST00000546969.1:-53 NM_001229:-53 AK292080:-54 ENST00000440484.1:-55 AB015653:-59 AK292111:-59 U60521:-83 BC006463:-133 ENST00000348549.9:-185 ENST00000546424.5:-283 NM_001278054:-283 NR_102733:-283 NR_102732:-283 AB209147:-283 |
TATA-Box annotation
| Distance to TSS: | 56 |
|---|---|
| Nearest PromoterID: | NM_001229 |
| Entrez ID: | 842 |
| Nearest Unigene: | Hs.329502 |
| Nearest Refseq: | NM_001229 |
| Nearest Ensembl: | ENSG00000132906 |
| Gene Name: | caspase 9 |
| Gene Alias: | APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 |
| Gene Description: | caspase 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
