Difference between revisions of "TSS:Hg 104635.1"
From referenceTSS
| Line 6: | Line 6: | ||
|VLA-BETA= | |VLA-BETA= | ||
|VLAB= | |VLAB= | ||
| + | |all_trans=LF375487:-15 MA611064:-15 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-15 |
|distance_to_tss=15274 | |distance_to_tss=15274 | ||
|end=32920301 | |end=32920301 | ||
| Line 14: | Line 15: | ||
|entrez_id=3688 | |entrez_id=3688 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
| − | |gene_alias=CD29 | + | |gene_alias=CD29{{!}}FNRB{{!}}GPIIA{{!}}MDF2{{!}}MSK12{{!}}VLA-BETA{{!}}VLAB |
|gene_description=integrin subunit beta 1 | |gene_description=integrin subunit beta 1 | ||
|gene_name=ITGB1 | |gene_name=ITGB1 | ||
| Line 22: | Line 23: | ||
|nearest_refseq=NM_002211 | |nearest_refseq=NM_002211 | ||
|nearest_unigene=Hs.643813 | |nearest_unigene=Hs.643813 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=32920267 | |start=32920267 | ||
|start_of_center_position=32920284 | |start_of_center_position=32920284 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF375487 MA611064 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104635.1 | |tss_id=hg_104635.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:55, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 32920284 |
|---|---|
| End of the center position in the TSS region: | 32920285 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF375487 MA611064 |
|---|---|
| Distance: | -15 |
| Num_trans: | 2 |
| All_trans: | LF375487:-15 MA611064:-15 |
TATA-Box annotation
| Distance to TSS: | 15274 |
|---|---|
| Nearest PromoterID: | NM_033668 |
| Entrez ID: | 3688 |
| Nearest Unigene: | Hs.643813 |
| Nearest Refseq: | NM_002211 |
| Nearest Ensembl: | ENSG00000150093 |
| Gene Name: | ITGB1 |
| Gene Alias: | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB |
| Gene Description: | integrin subunit beta 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
