Difference between revisions of "TSS:Hg 104666.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ICER= | |ICER= | ||
| − | |all_trans=ENST00000490460.5:0 ENST00000466251.5:0 | + | |all_trans=ENST00000490460.5:0 ENST00000466251.5:0 NM_001267563:0 NM_001267562:0 NM_001352467:0 NM_001352466:0 NM_001352465:0 NM_183013:0 BC017117:0 ENST00000461968.5:-7 ENST00000374726.7:-32 BC066342:-32 ENST00000482633.5:35 ENST00000489388.5:-49 ENST00000495960.5:50 ENST00000429130.7:78 ENST00000482646.5:-82 ENST00000469949.6:89 ENST00000460270.5:104 ENST00000496626.5:-114 NM_001881:-114 ENST00000496019.5:143 ENST00000374721.7:-145 ENST00000354759.7:149 D14825:149 ENST00000474362.5:-164 NM_181571:214 ENST00000489321.5:411 ENST00000427847.6:444 ENST00000374728.7:444 NM_183060:444 ENST00000345491.7:447 BC041810:447 ENST00000487132.5:464 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-17 |
|end=35127013 | |end=35127013 | ||
|end_of_center_position=35126984 | |end_of_center_position=35126984 | ||
|entrez_id=1390 | |entrez_id=1390 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
| − | |gene_alias=CREM-2 | + | |gene_alias=CREM-2{{!}}ICER{{!}}hCREM-2 |
|gene_description=cAMP responsive element modulator | |gene_description=cAMP responsive element modulator | ||
|gene_id=1390 | |gene_id=1390 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2352 | |hgnc_mgi_id=HGNC:2352 | ||
|nearest_ensembl=ENSG00000095794 | |nearest_ensembl=ENSG00000095794 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_183013 |
|nearest_refseq=NM_001881 | |nearest_refseq=NM_001881 | ||
|nearest_unigene=Hs.200250 | |nearest_unigene=Hs.200250 | ||
| − | |num_trans= | + | |num_trans=34 |
|species=human | |species=human | ||
|start=35126954 | |start=35126954 | ||
|start_of_center_position=35126983 | |start_of_center_position=35126983 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000490460.5 ENST00000466251.5 | + | |transcript_name=ENST00000490460.5 ENST00000466251.5 NM_001267563 NM_001267562 NM_001352467 NM_001352466 NM_001352465 NM_183013 BC017117 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104666.1 | |tss_id=hg_104666.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=F8WB03 | + | |uniprot_id=F8WB03 Q03060 |
}} | }} | ||
Revision as of 17:55, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35126983 |
|---|---|
| End of the center position in the TSS region: | 35126984 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000490460.5 ENST00000466251.5 NM_001267563 NM_001267562 NM_001352467 NM_001352466 NM_001352465 NM_183013 BC017117 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000490460.5:0 ENST00000466251.5:0 NM_001267563:0 NM_001267562:0 NM_001352467:0 NM_001352466:0 NM_001352465:0 NM_183013:0 BC017117:0 ENST00000461968.5:-7 ENST00000374726.7:-32 BC066342:-32 ENST00000482633.5:35 ENST00000489388.5:-49 ENST00000495960.5:50 ENST00000429130.7:78 ENST00000482646.5:-82 ENST00000469949.6:89 ENST00000460270.5:104 ENST00000496626.5:-114 NM_001881:-114 ENST00000496019.5:143 ENST00000374721.7:-145 ENST00000354759.7:149 D14825:149 ENST00000474362.5:-164 NM_181571:214 ENST00000489321.5:411 ENST00000427847.6:444 ENST00000374728.7:444 NM_183060:444 ENST00000345491.7:447 BC041810:447 ENST00000487132.5:464 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_183013 |
| Entrez ID: | 1390 |
| Nearest Unigene: | Hs.200250 |
| Nearest Refseq: | NM_001881 |
| Nearest Ensembl: | ENSG00000095794 |
| Gene Name: | cAMP responsive element modulator |
| Gene Alias: | CREM-2|ICER|hCREM-2 |
| Gene Description: | cAMP responsive element modulator |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
