Difference between revisions of "TSS:Hg 104743.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ChGn-2= | ||
| + | |GALNACT-2= | ||
| + | |GALNACT2= | ||
| + | |PRO0082= | ||
| + | |all_trans=M16029:-344 | ||
| + | |beta4GalNAcT= | ||
| + | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance_to_tss= | + | |distance=-344 |
| − | |entrez_id= | + | |distance_to_tss=9167 |
| + | |end=43113903 | ||
| + | |end_of_center_position=43113899 | ||
| + | |entrez_id=5979 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias= | + | |gene_alias=CDHF12{{!}}CDHR16{{!}}HSCR1{{!}}MEN2A{{!}}MEN2B{{!}}MTC1{{!}}PTC{{!}}RET-ELE1 |
| − | |gene_description= | + | |gene_description=ret proto-oncogene |
| − | |gene_name= | + | |gene_name=RET |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000165731 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355216 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_000323 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.350321 |
| − | |tata_box= | + | |num_trans=1 |
| + | |species=human | ||
| + | |start=43113894 | ||
| + | |start_of_center_position=43113898 | ||
| + | |strand=+ | ||
| + | |tata_box=-12(GGCCAGAAAAGC,-,0.00) | ||
| + | |transcript_name=M16029 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104743.1 | |tss_id=hg_104743.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:57, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43113898 |
|---|---|
| End of the center position in the TSS region: | 43113899 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | M16029 |
|---|---|
| Distance: | -344 |
| Num_trans: | 1 |
| All_trans: | M16029:-344 |
TATA-Box annotation
| Distance to TSS: | 9167 |
|---|---|
| Nearest PromoterID: | NM_001355216 |
| Entrez ID: | 5979 |
| Nearest Unigene: | Hs.350321 |
| Nearest Refseq: | NM_000323 |
| Nearest Ensembl: | ENSG00000165731 |
| Gene Name: | RET |
| Gene Alias: | CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 |
| Gene Description: | ret proto-oncogene |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -12(GGCCAGAAAAGC,-,0.00) |
