Difference between revisions of "TSS:Hg 10476.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.165 |distance_to_tss=-12935 |entrez_id=23013 |gc_percent=0.746269 |gene_alias=HIAA0929|MINT|RBM15C|SHARP |gene_description=spen family transcription...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MINT= | ||
| + | |RBM15C= | ||
| + | |SHARP= | ||
| + | |all_trans=LF357213:117 MA592790:117 BC012991:132 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance_to_tss=- | + | |distance=117 |
| + | |distance_to_tss=-12778 | ||
| + | |end=15834941 | ||
| + | |end_of_center_position=15834929 | ||
|entrez_id=23013 | |entrez_id=23013 | ||
|gc_percent=0.746269 | |gc_percent=0.746269 | ||
| − | |gene_alias=HIAA0929 | + | |gene_alias=HIAA0929{{!}}MINT{{!}}RBM15C{{!}}SHARP |
|gene_description=spen family transcriptional repressor | |gene_description=spen family transcriptional repressor | ||
|gene_name=SPEN | |gene_name=SPEN | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_015001 | |nearest_refseq=NM_015001 | ||
|nearest_unigene=Hs.744843 | |nearest_unigene=Hs.744843 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=15834916 | ||
| + | |start_of_center_position=15834928 | ||
| + | |strand=- | ||
| + | |transcript_name=LF357213 MA592790 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10476.1 | |tss_id=hg_10476.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 17:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 15834928 |
|---|---|
| End of the center position in the TSS region: | 15834929 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | LF357213 MA592790 |
|---|---|
| Distance: | 117 |
| Num_trans: | 3 |
| All_trans: | LF357213:117 MA592790:117 BC012991:132 |
TATA-Box annotation
| Distance to TSS: | -12778 |
|---|---|
| Nearest PromoterID: | NM_015001 |
| Entrez ID: | 23013 |
| Nearest Unigene: | Hs.744843 |
| Nearest Refseq: | NM_015001 |
| Nearest Ensembl: | ENSG00000065526 |
| Gene Name: | SPEN |
| Gene Alias: | HIAA0929|MINT|RBM15C|SHARP |
| Gene Description: | spen family transcriptional repressor |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
