Difference between revisions of "TSS:Hg 10477.1"
From referenceTSS
| Line 3: | Line 3: | ||
|RBM15C= | |RBM15C= | ||
|SHARP= | |SHARP= | ||
| − | |all_trans=AK094772:-38 | + | |all_trans=LF357212:0 MA592789:0 LF206701:-28 MA442278:-28 AK094772:-38 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss=- | + | |distance_to_tss=-11896 |
|end=15835822 | |end=15835822 | ||
|end_of_center_position=15835812 | |end_of_center_position=15835812 | ||
|entrez_id=23013 | |entrez_id=23013 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=HIAA0929 | + | |gene_alias=HIAA0929{{!}}MINT{{!}}RBM15C{{!}}SHARP |
|gene_description=spen family transcriptional repressor | |gene_description=spen family transcriptional repressor | ||
|gene_id=729614 | |gene_id=729614 | ||
| − | |gene_name= | + | |gene_name=SPEN |
|gene_source=EntrezGene:729614 | |gene_source=EntrezGene:729614 | ||
|gene_symbol=FLJ37453 | |gene_symbol=FLJ37453 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_015001 | |nearest_refseq=NM_015001 | ||
|nearest_unigene=Hs.744843 | |nearest_unigene=Hs.744843 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=15835800 | |start=15835800 | ||
|start_of_center_position=15835811 | |start_of_center_position=15835811 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF357212 MA592789 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10477.1 | |tss_id=hg_10477.1 | ||
Latest revision as of 17:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15835811 |
|---|---|
| End of the center position in the TSS region: | 15835812 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF357212 MA592789 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | LF357212:0 MA592789:0 LF206701:-28 MA442278:-28 AK094772:-38 |
TATA-Box annotation
| Distance to TSS: | -11896 |
|---|---|
| Nearest PromoterID: | NM_015001 |
| Entrez ID: | 23013 |
| Nearest Unigene: | Hs.744843 |
| Nearest Refseq: | NM_015001 |
| Nearest Ensembl: | ENSG00000065526 |
| Gene Name: | SPEN |
| Gene Alias: | HIAA0929|MINT|RBM15C|SHARP |
| Gene Description: | spen family transcriptional repressor |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
