Difference between revisions of "TSS:Hg 104841.1"
From referenceTSS
| Line 7: | Line 7: | ||
|SAPK1= | |SAPK1= | ||
|SAPK1c= | |SAPK1c= | ||
| − | |all_trans=ENST00000374189.5:-9 | + | |all_trans=ENST00000374189.5:-9 ENST00000429041.6:-19 NM_139046:-22 NM_139049:-22 NM_001323320:-22 NM_001323325:-22 NM_001323324:-22 NM_001323323:-22 NM_001323322:-22 NM_001323326:-22 NM_001323328:-22 NM_001323327:-22 NM_001323330:-22 NM_001323331:-22 NM_001323329:-22 NM_001323321:-22 NM_001323302:-22 NR_136585:-22 NR_136584:-22 NR_136583:-22 AK292523:29 ENST00000374179.8:39 ENST00000432379.5:-44 ENST00000395611.7:-60 NM_001278547:-60 ENST00000426557.5:312 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
|distance=-9 | |distance=-9 | ||
| − | |distance_to_tss= | + | |distance_to_tss=29 |
|end=48306714 | |end=48306714 | ||
|end_of_center_position=48306707 | |end_of_center_position=48306707 | ||
|entrez_id=5599 | |entrez_id=5599 | ||
|gc_percent=0.776119 | |gc_percent=0.776119 | ||
| − | |gene_alias=JNK | + | |gene_alias=JNK{{!}}JNK-46{{!}}JNK1{{!}}JNK1A2{{!}}JNK21B1/2{{!}}PRKM8{{!}}SAPK1{{!}}SAPK1c |
|gene_description=mitogen-activated protein kinase 8 | |gene_description=mitogen-activated protein kinase 8 | ||
|gene_id=5599 | |gene_id=5599 | ||
| Line 26: | Line 26: | ||
|hgnc_mgi_id=HGNC:6881 | |hgnc_mgi_id=HGNC:6881 | ||
|nearest_ensembl=ENSG00000107643 | |nearest_ensembl=ENSG00000107643 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323327 |
|nearest_refseq=NM_002750 | |nearest_refseq=NM_002750 | ||
|nearest_unigene=Hs.138211 | |nearest_unigene=Hs.138211 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=48306698 | |start=48306698 | ||
|start_of_center_position=48306706 | |start_of_center_position=48306706 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000374189 | + | |transcript_name=ENST00000374189.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104841.1 | |tss_id=hg_104841.1 | ||
Revision as of 18:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48306706 |
|---|---|
| End of the center position in the TSS region: | 48306707 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374189.5 |
|---|---|
| Distance: | -9 |
| Num_trans: | 26 |
| All_trans: | ENST00000374189.5:-9 ENST00000429041.6:-19 NM_139046:-22 NM_139049:-22 NM_001323320:-22 NM_001323325:-22 NM_001323324:-22 NM_001323323:-22 NM_001323322:-22 NM_001323326:-22 NM_001323328:-22 NM_001323327:-22 NM_001323330:-22 NM_001323331:-22 NM_001323329:-22 NM_001323321:-22 NM_001323302:-22 NR_136585:-22 NR_136584:-22 NR_136583:-22 AK292523:29 ENST00000374179.8:39 ENST00000432379.5:-44 ENST00000395611.7:-60 NM_001278547:-60 ENST00000426557.5:312 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_001323327 |
| Entrez ID: | 5599 |
| Nearest Unigene: | Hs.138211 |
| Nearest Refseq: | NM_002750 |
| Nearest Ensembl: | ENSG00000107643 |
| Gene Name: | mitogen-activated protein kinase 8 |
| Gene Alias: | JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c |
| Gene Description: | mitogen-activated protein kinase 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.776119 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
