Difference between revisions of "TSS:Hg 10485.1"
From referenceTSS
| Line 2: | Line 2: | ||
|ZNF151= | |ZNF151= | ||
|ZNF60= | |ZNF60= | ||
| − | |all_trans=ENST00000537142.5:0 ENST00000479282.5:0 | + | |all_trans=ENST00000375743.9:0 ENST00000537142.5:0 ENST00000479282.5:0 NM_003443:0 AK223618:0 AK301896:0 AK303823:0 AK315201:0 AK299820:0 AK302610:0 AK311083:0 AK309081:0 AK294796:-12 ENST00000375733.6:-22 NM_001324137:-22 NM_001242884:-22 NM_001287603:-22 NM_001287604:-22 NM_001324138:-22 AK226168:28 Y09723:52 LF357211:71 MA592788:71 BC126163:76 BC143965:76 BC143968:76 LF206700:-370 MA442277:-370 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| Line 11: | Line 11: | ||
|entrez_id=7709 | |entrez_id=7709 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
| − | |gene_alias=MIZ-1 | + | |gene_alias=MIZ-1{{!}}ZNF151{{!}}ZNF60{{!}}pHZ-67 |
|gene_description=zinc finger and BTB domain containing 17 | |gene_description=zinc finger and BTB domain containing 17 | ||
|gene_id=7709 | |gene_id=7709 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:12936 | |hgnc_mgi_id=HGNC:12936 | ||
|nearest_ensembl=ENSG00000116809 | |nearest_ensembl=ENSG00000116809 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001242884 |
|nearest_refseq=NM_003443 | |nearest_refseq=NM_003443 | ||
|nearest_unigene=Hs.433764 | |nearest_unigene=Hs.433764 | ||
| − | |num_trans= | + | |num_trans=28 |
|pHZ-67= | |pHZ-67= | ||
|species=human | |species=human | ||
| Line 30: | Line 30: | ||
|start_of_center_position=15976090 | |start_of_center_position=15976090 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000537142.5 ENST00000479282.5 | + | |transcript_name=ENST00000375743.9 ENST00000537142.5 ENST00000479282.5 NM_003443 AK223618 AK301896 AK303823 AK315201 AK299820 AK302610 AK311083 AK309081 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10485.1 | |tss_id=hg_10485.1 | ||
Revision as of 18:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 15976090 |
|---|---|
| End of the center position in the TSS region: | 15976091 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000375743.9 ENST00000537142.5 ENST00000479282.5 NM_003443 AK223618 AK301896 AK303823 AK315201 AK299820 AK302610 AK311083 AK309081 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000375743.9:0 ENST00000537142.5:0 ENST00000479282.5:0 NM_003443:0 AK223618:0 AK301896:0 AK303823:0 AK315201:0 AK299820:0 AK302610:0 AK311083:0 AK309081:0 AK294796:-12 ENST00000375733.6:-22 NM_001324137:-22 NM_001242884:-22 NM_001287603:-22 NM_001287604:-22 NM_001324138:-22 AK226168:28 Y09723:52 LF357211:71 MA592788:71 BC126163:76 BC143965:76 BC143968:76 LF206700:-370 MA442277:-370 |
TATA-Box annotation
| Distance to TSS: | 42 |
|---|---|
| Nearest PromoterID: | NM_001242884 |
| Entrez ID: | 7709 |
| Nearest Unigene: | Hs.433764 |
| Nearest Refseq: | NM_003443 |
| Nearest Ensembl: | ENSG00000116809 |
| Gene Name: | zinc finger and BTB domain containing 17 |
| Gene Alias: | MIZ-1|ZNF151|ZNF60|pHZ-67 |
| Gene Description: | zinc finger and BTB domain containing 17 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
