Difference between revisions of "TSS:Hg 104872.1"
From referenceTSS
| Line 2: | Line 2: | ||
|UNQ9338= | |UNQ9338= | ||
|VKGE9338= | |VKGE9338= | ||
| − | |all_trans=ENST00000465910.5 | + | |all_trans=ENST00000465910.5:372 AK024502:372 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 11: | Line 11: | ||
|entrez_id=474354 | |entrez_id=474354 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=UNQ933 | + | |gene_alias=UNQ933{{!}}UNQ9338{{!}}VKGE9338 |
|gene_description=leucine rich repeat containing 18 | |gene_description=leucine rich repeat containing 18 | ||
|gene_id=57705 | |gene_id=57705 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_001006939 | |nearest_refseq=NM_001006939 | ||
|nearest_unigene=Hs.202438 | |nearest_unigene=Hs.202438 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=48945658 | |start=48945658 | ||
|start_of_center_position=48945666 | |start_of_center_position=48945666 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=77(TTCTTTTAAAAG,-,0.00),79(CTTTTAAAAGTG,+,0.00) |
| − | |transcript_name=ENST00000465910.5 | + | |transcript_name=ENST00000465910.5 AK024502 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104872.1 | |tss_id=hg_104872.1 | ||
Revision as of 18:00, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48945666 |
|---|---|
| End of the center position in the TSS region: | 48945667 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000465910.5 AK024502 |
|---|---|
| Distance: | 372 |
| Num_trans: | 2 |
| All_trans: | ENST00000465910.5:372 AK024502:372 |
TATA-Box annotation
| Distance to TSS: | -31432 |
|---|---|
| Nearest PromoterID: | NM_001006939 |
| Entrez ID: | 474354 |
| Nearest Unigene: | Hs.202438 |
| Nearest Refseq: | NM_001006939 |
| Nearest Ensembl: | ENSG00000165383 |
| Gene Name: | WDFY family member 4 |
| Gene Alias: | UNQ933|UNQ9338|VKGE9338 |
| Gene Description: | leucine rich repeat containing 18 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 77(TTCTTTTAAAAG,-,0.00),79(CTTTTAAAAGTG,+,0.00) |
