Difference between revisions of "TSS:Hg 104886.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000470615.1:11 | + | |all_trans=ENST00000470615.1:11 AL833265:-57 ENST00000374144.8:-80 NM_001135196:-80 AK127811:-108 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=11 | |distance=11 | ||
| − | |distance_to_tss= | + | |distance_to_tss=86 |
|end=49299263 | |end=49299263 | ||
|end_of_center_position=49299257 | |end_of_center_position=49299257 | ||
|entrez_id=118461 | |entrez_id=118461 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias= | + | |gene_alias=CEFIP |
|gene_description=chromosome 10 open reading frame 71 | |gene_description=chromosome 10 open reading frame 71 | ||
|gene_id=118461 | |gene_id=118461 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_199459 | |nearest_refseq=NM_199459 | ||
|nearest_unigene=Hs.585480 | |nearest_unigene=Hs.585480 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=49299249 | |start=49299249 | ||
|start_of_center_position=49299256 | |start_of_center_position=49299256 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000470615 | + | |transcript_name=ENST00000470615.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104886.1 | |tss_id=hg_104886.1 | ||
Revision as of 18:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 49299256 |
|---|---|
| End of the center position in the TSS region: | 49299257 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000470615.1 |
|---|---|
| Distance: | 11 |
| Num_trans: | 5 |
| All_trans: | ENST00000470615.1:11 AL833265:-57 ENST00000374144.8:-80 NM_001135196:-80 AK127811:-108 |
TATA-Box annotation
| Distance to TSS: | 86 |
|---|---|
| Nearest PromoterID: | NM_001135196 |
| Entrez ID: | 118461 |
| Nearest Unigene: | Hs.585480 |
| Nearest Refseq: | NM_199459 |
| Nearest Ensembl: | ENSG00000177354 |
| Gene Name: | chromosome 10 open reading frame 71 |
| Gene Alias: | CEFIP |
| Gene Description: | chromosome 10 open reading frame 71 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
