Difference between revisions of "TSS:Hg 1049.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |chr=chr1 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| − | |distance_to_tss=- | + | |distance=NA |
| + | |distance_to_tss=-277 | ||
| + | |end=18956966 | ||
| + | |end_of_center_position=18956954 | ||
|entrez_id=126917 | |entrez_id=126917 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_001136265 | |nearest_refseq=NM_001136265 | ||
|nearest_unigene=Hs.466625 | |nearest_unigene=Hs.466625 | ||
| − | |tata_box= | + | |num_trans=0 |
| + | |species=human | ||
| + | |start=18956940 | ||
| + | |start_of_center_position=18956953 | ||
| + | |strand=+ | ||
| + | |tata_box=61(GCCTCTTAAAGG,-,0.00),62(CCTCTTAAAGGG,+,0.00),64(TCTTAAAGGGGC,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1049.1 | |tss_id=hg_1049.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:01, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 18956953 |
|---|---|
| End of the center position in the TSS region: | 18956954 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -277 |
|---|---|
| Nearest PromoterID: | NM_001136265 |
| Entrez ID: | 126917 |
| Nearest Unigene: | Hs.466625 |
| Nearest Refseq: | NM_001136265 |
| Nearest Ensembl: | ENSG00000169991 |
| Gene Name: | IFFO2 |
| Gene Alias: | - |
| Gene Description: | intermediate filament family orphan 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 61(GCCTCTTAAAGG,-,0.00),62(CCTCTTAAAGGG,+,0.00),64(TCTTAAAGGGGC,+,0.00) |
