Difference between revisions of "TSS:Hg 104917.1"
From referenceTSS
| Line 6: | Line 6: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=32521 |
|end=50853109 | |end=50853109 | ||
|end_of_center_position=50853106 | |end_of_center_position=50853106 | ||
|entrez_id=29974 | |entrez_id=29974 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=ACF | + | |gene_alias=ACF{{!}}ACF64{{!}}ACF65{{!}}APOBEC1CF{{!}}ASP |
|gene_description=APOBEC1 complementation factor | |gene_description=APOBEC1 complementation factor | ||
|gene_name=A1CF | |gene_name=A1CF | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000148584 | |nearest_ensembl=ENSG00000148584 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001370131 |
|nearest_refseq=NM_014576 | |nearest_refseq=NM_014576 | ||
|nearest_unigene=Hs.282795 | |nearest_unigene=Hs.282795 | ||
| Line 25: | Line 25: | ||
|start_of_center_position=50853105 | |start_of_center_position=50853105 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GCATATAAAGGA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50853105 |
|---|---|
| End of the center position in the TSS region: | 50853106 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 32521 |
|---|---|
| Nearest PromoterID: | NM_001370131 |
| Entrez ID: | 29974 |
| Nearest Unigene: | Hs.282795 |
| Nearest Refseq: | NM_014576 |
| Nearest Ensembl: | ENSG00000148584 |
| Gene Name: | A1CF |
| Gene Alias: | ACF|ACF64|ACF65|APOBEC1CF|ASP |
| Gene Description: | APOBEC1 complementation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCATATAAAGGA,+,0.00) |
