Difference between revisions of "TSS:Hg 104972.1"
From referenceTSS
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| Line 9: | Line 9: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-248919 | |distance_to_tss=-248919 | ||
|end=53020624 | |end=53020624 | ||
| + | |end_of_center_position=53020620 | ||
|entrez_id=4153 | |entrez_id=4153 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=COLEC1 | + | |gene_alias=COLEC1{{!}}HSMBPC{{!}}MBL{{!}}MBL2D{{!}}MBP{{!}}MBP-C{{!}}MBP1{{!}}MBPD |
|gene_description=mannose binding lectin 2 | |gene_description=mannose binding lectin 2 | ||
|gene_name=MBL2 | |gene_name=MBL2 | ||
| Line 25: | Line 26: | ||
|species=human | |species=human | ||
|start=53020614 | |start=53020614 | ||
| + | |start_of_center_position=53020619 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-88(GGCCTTTAAGAG,-,0.00),-87(GCCTTTAAGAGG,-,0.00),-86(CCTTTAAGAGGT,+,0.00),-34(CCTTATAAAAGG,+,0.00),-34(CCTTATAAAAGG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:03, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 53020619 |
|---|---|
| End of the center position in the TSS region: | 53020620 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -248919 |
|---|---|
| Nearest PromoterID: | NM_000242 |
| Entrez ID: | 4153 |
| Nearest Unigene: | Hs.499674 |
| Nearest Refseq: | NM_000242 |
| Nearest Ensembl: | ENSG00000165471 |
| Gene Name: | MBL2 |
| Gene Alias: | COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD |
| Gene Description: | mannose binding lectin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -88(GGCCTTTAAGAG,-,0.00),-87(GCCTTTAAGAGG,-,0.00),-86(CCTTTAAGAGGT,+,0.00),-34(CCTTATAAAAGG,+,0.00),-34(CCTTATAAAAGG,-,0.00) |
